View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21344_low_3 (Length: 417)

Name: NF21344_low_3
Description: NF21344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21344_low_3
NF21344_low_3
[»] chr8 (11 HSPs)
chr8 (232-399)||(23770920-23771087)
chr8 (232-399)||(5019427-5019598)
chr8 (322-399)||(23771082-23771159)
chr8 (17-76)||(5004202-5004261)
chr8 (17-76)||(5019212-5019271)
chr8 (322-396)||(5004865-5004936)
chr8 (322-388)||(5019593-5019656)
chr8 (342-399)||(5004813-5004870)
chr8 (322-366)||(5005005-5005049)
chr8 (359-388)||(5019799-5019828)
chr8 (328-399)||(5004938-5005010)
[»] scaffold0275 (9 HSPs)
scaffold0275 (232-399)||(20951-21118)
scaffold0275 (15-78)||(21272-21335)
scaffold0275 (355-399)||(11671-11715)
scaffold0275 (17-76)||(12367-12426)
scaffold0275 (17-76)||(6730-6789)
scaffold0275 (322-388)||(11610-11676)
scaffold0275 (143-176)||(21174-21207)
scaffold0275 (322-398)||(6069-6142)
scaffold0275 (340-398)||(11790-11848)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 23770920 - 23771087
Alignment:
Q  232 ctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgttg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770920 ctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgttg 23771019  T
Q  332 ttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771020 ttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 23771087  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 5019427 - 5019598
Alignment:
Q  232 ctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgttg 331  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||||||||||    
T  5019427 ctcaattattaatgttggagcagttattgaagtactcaattataggtttgaaatttatgtgttagtgggttatttatgtgttcgtacgtagcttatgttg 5019526  T
Q  332 ttggctaaaagagaatcgtattgtagaa----ggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    ||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||||||||    
T  5019527 ttggctaaaagagaatcgtattgcagaaggttggactaatttatgcatgtttgttattgtgtacctgcttat 5019598  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 23771082 - 23771159
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    |||||||||||| |||  |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23771082 gcttatgttgttagcttcaagataattgtattctagaaggactaatttatgcatgtttgttattgtgtacctgcttat 23771159  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 5004202 - 5004261
Alignment:
Q  17 agaagaaggaagagttggaggctgttacggctatgcctactgatatggtcccaggagctg 76  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  5004202 agaagaaggaagagttggaggctgatacggctgtgcctactgatatgggcccaggagctg 5004261  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 5019212 - 5019271
Alignment:
Q  17 agaagaaggaagagttggaggctgttacggctatgcctactgatatggtcccaggagctg 76  Q
    |||||||||||||||||||||||| || | || ||||||| |||||||||||||||||||    
T  5019212 agaagaaggaagagttggaggctgataagactttgcctaccgatatggtcccaggagctg 5019271  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 5004865 - 5004936
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgct 396  Q
    ||||||||||||||||| |||||||| |||||   |||||||||||||||||||| || |||||||  |||||||    
T  5004865 gcttatgttgttggctagaagagaattgtatt---gaaggactaatttatgcatgcttattattgtcgacctgct 5004936  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 5019593 - 5019656
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtg 388  Q
    |||||| ||||| |||| |||||||| |||||||||   ||||||||||||||||||||||||||||    
T  5019593 gcttatattgttagctacaagagaattgtattgtag---gactaatttatgcatgtttgttattgtg 5019656  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 5004813 - 5004870
Alignment:
Q  342 gagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    |||||| |||||||||||| |||||| ||||||||||| |||| ||| ||||||||||    
T  5004813 gagaattgtattgtagaagaactaatgtatgcatgtttattatcgtggacctgcttat 5004870  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 5005005 - 5005049
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaa 366  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||    
T  5005005 gcttatgttgttggctataagagaattgtattggagaaggactaa 5005049  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 388
Target Start/End: Original strand, 5019799 - 5019828
Alignment:
Q  359 aggactaatttatgcatgtttgttattgtg 388  Q
    ||||||||||||||||||||||||||||||    
T  5019799 aggactaatttatgcatgtttgttattgtg 5019828  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 5004938 - 5005010
Alignment:
Q  328 gttgttggctaaaagagaatcgtattgt-agaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    ||||||| ||| |||||| | ||||| | ||||| ||||||||||||||| || |||||||| ||||||||||    
T  5004938 gttgttgcctagaagagatttgtattttcagaagaactaatttatgcatgattattattgtggacctgcttat 5005010  T

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Target: scaffold0275 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 232 - 399
Target Start/End: Complemental strand, 21118 - 20951
Alignment:
Q  232 ctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgttg 331  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21118 ctcagttattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgttg 21019  T
Q  332 ttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21018 ttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttat 20951  T

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Target: scaffold0275; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 21335 - 21272
Alignment:
Q  15 agagaagaaggaagagttggaggctgttacggctatgcctactgatatggtcccaggagctgtt 78  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21335 agagaagaaggaagagttggaggctgttagggctatgcctactgatatggtcccaggagctgtt 21272  T

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Target: scaffold0275; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 11715 - 11671
Alignment:
Q  355 tagaaggactaatttatgcatgtttgttattgtgtacctgcttat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11715 tagaaggactaatttatgcatgtttgttattgtgtacctgcttat 11671  T

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Target: scaffold0275; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 12426 - 12367
Alignment:
Q  17 agaagaaggaagagttggaggctgttacggctatgcctactgatatggtcccaggagctg 76  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||    
T  12426 agaagaaggaagagtcggaggctgatacggctttgcctactgatatggtccgaggagctg 12367  T

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Target: scaffold0275; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 6789 - 6730
Alignment:
Q  17 agaagaaggaagagttggaggctgttacggctatgcctactgatatggtcccaggagctg 76  Q
    ||||||||||||||| ||| |||| || |||| |||||||||||||||||| ||||||||    
T  6789 agaagaaggaagagtcggaagctgatagggctttgcctactgatatggtccgaggagctg 6730  T

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Target: scaffold0275; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 11676 - 11610
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtg 388  Q
    |||||||||||| |||  |||| ||| ||||| |||||||||||||||||||||||| |||| ||||    
T  11676 gcttatgttgttagcttcaagataattgtattctagaaggactaatttatgcatgttcgttactgtg 11610  T

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Target: scaffold0275; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 21207 - 21174
Alignment:
Q  143 ctgatagggctgtggctgctgataccggctcaag 176  Q
    ||||||||||||||||||||||||||||||||||    
T  21207 ctgatagggctgtggctgctgataccggctcaag 21174  T

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Target: scaffold0275; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 6142 - 6069
Alignment:
Q  322 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgctta 398  Q
    |||| |||||||||||| |||||||  ||||||   ||||||||||||||||||| || |||||||  |||||||||    
T  6142 gcttgtgttgttggctataagagaactgtattg---aaggactaatttatgcatgcttattattgtcgacctgctta 6069  T

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Target: scaffold0275; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 11848 - 11790
Alignment:
Q  340 aagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgctta 398  Q
    |||||||| |||| |||||||||||||| |||||||| || |||||||  |||||||||    
T  11848 aagagaattgtatcgtagaaggactaatatatgcatgcttattattgtcgacctgctta 11790  T

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