View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21345_high_3 (Length: 346)
Name: NF21345_high_3
Description: NF21345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21345_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 13680299 - 13679976
Alignment:
| Q |
10 |
aagaatatatagggacattgttttcttaatttaatcaacctgattaaattatttgaaattgaagggagtaaggtaacatgtaccctttttatgtcacatg |
109 |
Q |
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| T |
13680299 |
aagaatatatagggacattgttttcttaatttaatcaacctgattaaattatttgaaattgaagggagtaaggtaacatgtaccctttttatgtcacatg |
13680200 |
T |
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| Q |
110 |
cttatttattccattcttttggtaacaatttgnnnnnnnnnn--aacaataaatgaatttctagatgtttttaaaataaagttttgaaaccaaatttggt |
207 |
Q |
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| T |
13680199 |
cttatttattccattcttttggtaacaatttgtttttttttttgaacaataaatgaatttctagatgtttttaaaataaagttttgaaaccaaatttggt |
13680100 |
T |
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| Q |
208 |
ggacacagttgatacactctaaaattttctcatcttacaatggatagactatggtattagatttacacattgcgagtatttggttgtgcagtggtgaagg |
307 |
Q |
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| T |
13680099 |
ggacacagttgatacactctaaaattttctcatcttacaatggatagactatggtattagatttacacattgcgagtgtttggttgtgcagtggtgaagg |
13680000 |
T |
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| Q |
308 |
ttggctttgattttgtaaagtgat |
331 |
Q |
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| T |
13679999 |
ttggctttgattttgtaaagtgat |
13679976 |
T |
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