View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21345_high_4 (Length: 298)
Name: NF21345_high_4
Description: NF21345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21345_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1900918 - 1900619
Alignment:
| Q |
1 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
87 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1900918 |
acttgccaagggagagtcatttgagtagagtctattcatacgtacatcttaatggatggattatattatgtcgttatgctcgatcttgcatggtagattc |
1900819 |
T |
|
| Q |
88 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
187 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1900818 |
ttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaa |
1900719 |
T |
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| Q |
188 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctctaaagcccttccctctctccttt |
287 |
Q |
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||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900718 |
ggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctctaaagcccttccctctctccttt |
1900619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1910364 - 1910065
Alignment:
| Q |
1 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
87 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1910364 |
acttgccaagggagagtcatttgagtagagtctattcatacgtacatcttaatggatggattatattatgtcgttatgctcgatcttgcatggtagattc |
1910265 |
T |
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| Q |
88 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
187 |
Q |
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| T |
1910264 |
ttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaa |
1910165 |
T |
|
| Q |
188 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctctaaagcccttccctctctccttt |
287 |
Q |
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||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910164 |
ggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctctaaagcccttccctctctccttt |
1910065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1894016 - 1893770
Alignment:
| Q |
1 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||| | ||||| |||||||||||| |
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| T |
1894016 |
acttgccaagggagagtcatttgagtagagtctattcgtatgtataacttaatggatggattctattacgtcgttatgctctatctttcatggtagattc |
1893917 |
T |
|
| Q |
88 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
187 |
Q |
| |
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|| |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||| |
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| T |
1893916 |
acgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaa |
1893817 |
T |
|
| Q |
188 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
234 |
Q |
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|||||||||| || |||||||||||| || |||||| ||||||| |
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| T |
1893816 |
ggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1893770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1903462 - 1903216
Alignment:
| Q |
1 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||| | ||||| |||||||||||| |
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| T |
1903462 |
acttgccaagggagagtcatttgagtagagtctattcgtatgtataacttaatggatggattctattacgtcgttatgctctatctttcatggtagattc |
1903363 |
T |
|
| Q |
88 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
187 |
Q |
| |
|
|| |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||| |
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| T |
1903362 |
acgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaa |
1903263 |
T |
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| Q |
188 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
234 |
Q |
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|||||||||| || |||||||||||| || |||||| ||||||| |
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| T |
1903262 |
ggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1903216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 2934446 - 2934605
Alignment:
| Q |
70 |
atcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaa |
169 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||||| |
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| T |
2934446 |
atcttgcatggtagattcatgatgccccatttacaatgtagcctgttagggacctagaacctaacggagaaaataacacagcaac-------aaatggaa |
2934538 |
T |
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| Q |
170 |
tctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctc |
236 |
Q |
| |
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| ||||||||| |||||||||||||||| || |||||||||||| || ||||| ||||||||| |
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| T |
2934539 |
tgtattatttatgaaaaaggaaaattaccgttgaacggtactcctactgcccagaggaaagctcctc |
2934605 |
T |
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