View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21345_low_1 (Length: 485)
Name: NF21345_low_1
Description: NF21345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21345_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 9430221 - 9430683
Alignment:
| Q |
9 |
gagaagaatcaaattaaattagaagacgagttatgaaaaaatgtgagtggtaaaataataaattggggttttgttacaagtaagtgagtgaagattaata |
108 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
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| T |
9430221 |
gagaagaatcaaattaaattagaagatgggttatgaaaaaatgtgagtggtaaaataataaattggggttttgttacaagtgagtgggtgaagattaaga |
9430320 |
T |
|
| Q |
109 |
agatgatttatgaaattggtatttcatctctcaattgaataagaagatgattgaagtttaataattattgagggtggtgggtgagtggagaccgtgtttt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||| |||| |
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| T |
9430321 |
agatgatttatgaaattggtatttcatctctcaattgactaagaagatgattgaagtttattaattactgaggatagtgggtgagtggagaccgtatttt |
9430420 |
T |
|
| Q |
209 |
catttaaagaaattttgacacctgctaggttaatggtgatggaagagagagtggtggtggaagctgcggtggnnnnnnntttagtgttgagagtttagga |
308 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
9430421 |
catttaaggaaattttgacacatgctaggttaatggtaatggaagagagagtggtggtggaagctacggtgaaaaaaaatctagtgttgagagtttagga |
9430520 |
T |
|
| Q |
309 |
taaaactat-ttctttacttaatttaatggtcaatatttatttatccaaggtggaaaactctttctctttcctatgctaaactccacctgcatgggaatg |
407 |
Q |
| |
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||||||||| ||||||||||||| ||||||||| | |||| || |||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||| |
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| T |
9430521 |
taaaactatgttctttacttaatctaatggtcagtgtttacttgtccaaggtggaaaactctttatctttcccatgttaaactccacctacatgggaatg |
9430620 |
T |
|
| Q |
408 |
cagcaagttccaccttatggaagtaccatacaagcgagcaacatgtcttacgctcgaagatac |
470 |
Q |
| |
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| T |
9430621 |
ccgcaagttccaccttatggaagtactatgcaagcgagcaacatgtcttacgctcgaagatac |
9430683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 55124809 - 55124414
Alignment:
| Q |
9 |
gagaagaatcaaattaaattagaagacgagttatgaaaaaatgtgagtggtaaaataataaattggggttttgttacaagtaagtgagtgaagattaata |
108 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
55124809 |
gagaagaatcaaattaaacaagaagatgagttatgagaaaaggtgagtgataaaataataaattggggttttgttacaagtgagtgagtgaagattaaga |
55124710 |
T |
|
| Q |
109 |
agatgatttatgaaattggtatttcatctctcaattgaataagaagatgattgaagtttaataattattgagggtggtgggtgagtggagaccgtgtttt |
208 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
55124709 |
agatgatttattaaattggtatttcatctctcaattgactaagatgatgattaaagtttaataattactaatggtggtgggtgagtggagaccgtgtttt |
55124610 |
T |
|
| Q |
209 |
ca-tttaaagaaattttgaca--------cctgctaggttaatggtgatggaagagagagtggtggtggaagctgcggtggnnnnnnntttagtgttgag |
299 |
Q |
| |
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|| ||||| |||||||||| | ||| | |||||||||||||||||||||||| ||||||||||| | | | |||| ||||||| |
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| T |
55124609 |
cattttaaggaaattttgatattgttgttgctgatgggttaatggtgatggaagagagagcggtggtggaagttaaag-cgaaaaaaatttaatgttgag |
55124511 |
T |
|
| Q |
300 |
agtttaggataaaactat-ttctttacttaatttaatggtcaatatttatttatccaaggtggaaaactctttctctttcctatgctaaactccacc |
395 |
Q |
| |
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| | || ||||||||||| |||||||| | || |||| |||||||||||||| ||| ||||| |||||||||| |||||| ||||||||| ||||| |
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| T |
55124510 |
aatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttcccatgctaaaccccacc |
55124414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 46 - 395
Target Start/End: Complemental strand, 12732605 - 12732247
Alignment:
| Q |
46 |
aaaatgtgagtggtaaaataataaattggggttttgttacaagtaagtgagtgaagattaataagatgatttatgaaattggtatttcatctctcaattg |
145 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
12732605 |
aaaaggtgagtgataaaataataaattggggttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattg |
12732506 |
T |
|
| Q |
146 |
aataagaagatgattgaagtttaataattattgagggtggtgggtgagtggagaccgtgttttca-tttaaagaaattttgaca--------cctgctag |
236 |
Q |
| |
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| ||||| ||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| ||||| |||||||||| | ||| | | |
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| T |
12732505 |
actaagatgatgattaaagtttaataattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatgg |
12732406 |
T |
|
| Q |
237 |
gttaatggtgatggaagagagagtggtggtggaagctgcggtggnnnnnnntttagtgttgagagtttaggataaaactat-ttctttacttaatttaat |
335 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| | ||| |||||||||| || ||||||||||| |||||||| | || |||| |
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| T |
12732405 |
gttaatggtgatggaagagagagcggtggtggaagctaaag-caaaaaaaaattaatgttgagagtctatgataaaactatgttctttacatgatctaat |
12732307 |
T |
|
| Q |
336 |
ggtcaatatttatttatccaaggtggaaaactctttctctttcctatgctaaactccacc |
395 |
Q |
| |
|
|||||||||||| || ||| ||||| |||||||||| |||||| ||||||||| ||||| |
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|
| T |
12732306 |
ggtcaatatttactttcccatggtgggaaactctttccctttcccatgctaaaccccacc |
12732247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 12732610 - 12732651
Alignment:
| Q |
85 |
caagtaagtgagtgaagattaataagatgatttatgaaattg |
126 |
Q |
| |
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||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
12732610 |
caagtgagtgagtgaagattaagaagatgatttattaaattg |
12732651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 6680062 - 6680165
Alignment:
| Q |
12 |
aagaatcaaattaaattagaagacgagttatgaaaaaatgtgagtggtaaaataataaattggggttttgttacaagtaagtgagtgaagattaataaga |
111 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
6680062 |
aagaatcaaattaaataagaagatgagttatgagaaaaggtgagtgataaaata-taaattggggttttgttacaagtgagtgagtgaagattaagaaga |
6680160 |
T |
|
| Q |
112 |
tgatt |
116 |
Q |
| |
|
||||| |
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|
| T |
6680161 |
tgatt |
6680165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 6680153 - 6680232
Alignment:
| Q |
148 |
taagaagatgattgaagtttaataattattgagggtggtgggtgagtggagaccgtgttttca-tttaaagaaattttga |
226 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
6680153 |
taagaagatgattgaattttaataattactgatggtggtgggtgagtggagaccgtgttttcagtttaaggaaattttga |
6680232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 394
Target Start/End: Original strand, 6680284 - 6680389
Alignment:
| Q |
290 |
tagtgttgagagtttaggataaaactat-ttctttacttaatttaatggtcaatatttatttatccaaggtggaaaactctttctctttcctatgctaaa |
388 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||||||||||| |||||||||||||||| || ||| |||| |||||||||| |||||| |||||||| |
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|
| T |
6680284 |
tagtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttcccatgctaaa |
6680383 |
T |
|
| Q |
389 |
ctccac |
394 |
Q |
| |
|
| |||| |
|
|
| T |
6680384 |
ccccac |
6680389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 13856946 - 13856870
Alignment:
| Q |
91 |
agtgagtgaagattaataagatgatttatgaaattggtatttcatctctcaattgaataagaagatgattgaagtttaataat |
173 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| | |||||||||||||||| ||||| |
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|
| T |
13856946 |
agtgagtgaagattaa---gattattgatgaaattggtatttcatctcacaattggct---aagatgattgaagtttgataat |
13856870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 13868475 - 13868399
Alignment:
| Q |
91 |
agtgagtgaagattaataagatgatttatgaaattggtatttcatctctcaattgaataagaagatgattgaagtttaataat |
173 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| | |||||||||||||||| ||||| |
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|
| T |
13868475 |
agtgagtgaagattaa---gattattgatgaaattggtatttcatctcacaattggct---aagatgattgaagtttgataat |
13868399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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