View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21345_low_2 (Length: 441)
Name: NF21345_low_2
Description: NF21345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21345_low_2 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 43519406 - 43519819
Alignment:
| Q |
19 |
aaaaataacaaaggtcttgctaacaagtgtgtgcgctcgggacacttgtgcttctctaagggtctcaccccattcactaccc-gtgacttctttactcac |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
43519406 |
aaaaataacagaggtcttgctaacaagtgtgtgcgctcgggacacttgtgcttctctaagggtctcaccccattcactaccccgtgatttctttactcac |
43519505 |
T |
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| Q |
118 |
caatacttgatactatcatgtgcaacaccataaccaaccacaataatagcatgttggttatgtttcacgtttgtgattgtattccgtgtgaacaaaggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519506 |
caatacttgatactatcatgtgcaacaccataaccaaccacaataatagcatgttggttatgtttcacgtttgtgattgtattccgtgtgaacaaaggtg |
43519605 |
T |
|
| Q |
218 |
acatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgtgctggaaatggggaacattctttgagtttgtctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519606 |
acatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgtgctggaaatggggaacattctttgagtttgtctt |
43519705 |
T |
|
| Q |
318 |
ccccaacactaggtattttataggtgaaatgggacataaactgacgcatatttatttgcaacaactttgatgagttctttttcactattaacaggaactt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519706 |
ccccaacactaggtattttataggtgaaatgggacataaactgacgcatatttatttgcaacaactttgatgagttctttttcactattaacaggaactt |
43519805 |
T |
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| Q |
418 |
tctaatgccctttg |
431 |
Q |
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|||||||||||||| |
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| T |
43519806 |
tctaatgccctttg |
43519819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 89029 - 88918
Alignment:
| Q |
184 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
283 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
89029 |
acgtttgtgattgtattctgtgttaacaaaggtgacatgaaaaccacctttgaaatgaagaagttttgctatgttcagcattgggtttatgtgaccttgt |
88930 |
T |
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| Q |
284 |
gctggaaatggg |
295 |
Q |
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|||||| ||||| |
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| T |
88929 |
gctggatatggg |
88918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 88804 - 88756
Alignment:
| Q |
306 |
tgagtttgtcttccccaacactaggtattttataggtgaaatgggacat |
354 |
Q |
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| T |
88804 |
tgagtttgttttccacaacactaggtattttataggtgaaattggacat |
88756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 26676450 - 26676561
Alignment:
| Q |
184 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
283 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26676450 |
acgtttgtgattatattcagtgttaacaaaggtgacatgaaaaccacctttaaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26676549 |
T |
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| Q |
284 |
gctggaaatggg |
295 |
Q |
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| T |
26676550 |
gctggaaatggg |
26676561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 26948058 - 26948169
Alignment:
| Q |
184 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
283 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26948058 |
acgtttgtgattatattcagtgttaacaaaggtgacatgaaaaccacctttaaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26948157 |
T |
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| Q |
284 |
gctggaaatggg |
295 |
Q |
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|||||||||||| |
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| T |
26948158 |
gctggaaatggg |
26948169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 26903638 - 26903748
Alignment:
| Q |
184 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
283 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26903638 |
acgtttgtgattgtattcagtgttaacaaaggtgacatgaaaatcacttttgaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26903737 |
T |
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| Q |
284 |
gctggaaatgg |
294 |
Q |
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| T |
26903738 |
gctggaaatgg |
26903748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 37403591 - 37403641
Alignment:
| Q |
238 |
atgaagaagctttgctagtttcagcattgggtttatgtgagcttgtgctgg |
288 |
Q |
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| T |
37403591 |
atgaaggagttttgctagttttagcattgggtttatgtgaccttgtgctgg |
37403641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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