View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21345_low_3 (Length: 406)
Name: NF21345_low_3
Description: NF21345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21345_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 389
Target Start/End: Complemental strand, 2863470 - 2863084
Alignment:
| Q |
2 |
gtgggtagattattctataatgagttggaaaacacaactagtaaattaataatcatctcaccttctcaagcaagttaagcatcaacgattcattcatatt |
101 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
2863470 |
gtgggtaaactatgctataatgagttggaaaacacaactagtaaattaataatcatctcaccttctcaagcaagttaggtatcaacgattcattcatatt |
2863371 |
T |
|
| Q |
102 |
catatcttaaattgaaacttcatatttcaatttaaaccctccttttcatcaaagaaattttttataattcattattttgttcataaaagcttagtgctat |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2863370 |
catatcttaaattaaaacttcatatttcaatttaaaccctccttttcatcaaagaaaaattttataattcattattttgttcataaaagtttagtgctat |
2863271 |
T |
|
| Q |
202 |
tcaatagagaaccacagtcctgattgagggaggcattcttgatcaagattatgctaaacactcactcattgagtatgcttttgtgggctataatgatttg |
301 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2863270 |
tcaatagagaaccacagtcttgattga-ggaggcattcttgatcaagattatgctaaacactcactcattcagtatgcttttgtgggctataatgatttg |
2863172 |
T |
|
| Q |
302 |
ctacaatctgaatgaaatttccttaatatgtgcctgcctatgaatcataacagattccttctactacatccaaacacatgatttgagt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2863171 |
ctacaatctgaatgaaatttccttaatatgtgcctgcctatgaatcataacagattccttctactacatccaaacacatgatttgagt |
2863084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University