View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21346_high_10 (Length: 364)
Name: NF21346_high_10
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 9573629 - 9573280
Alignment:
| Q |
15 |
aacacagagggaaaggggaaagagaagaacgcaaactatggcaacacttcaagcttctcttctctctaaacctcttctcttcccattcctaattcctaat |
114 |
Q |
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| T |
9573629 |
aacacagagggaaaggggaaagagaagaactcaaactatggcaacacttcaagcttctcttctctctaaacctcttctcttcccattcctcattcctaat |
9573530 |
T |
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| Q |
115 |
cctaatcactctactcttcttaaacctcatcactttaatcccacgcgcctccacccgcgcgtccccttcactccccttctctgcacttttcaacccgata |
214 |
Q |
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| T |
9573529 |
ccttaccactctactcttcttaaacctcatcactttaatcccacgcgcctccacccgcgcgttcccttcactccccttctctgcacttttcaacccgata |
9573430 |
T |
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| Q |
215 |
ctacactcccccactccgaacctaatcccgaacctatctccgattctcctaatcccgagtctgttacgattctcgattcaaattcttcgaatgaatcgaa |
314 |
Q |
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| T |
9573429 |
ctacacttccccactccgaacctaatcccgaacctatctccgattctcctaatcccgagtctgttacgattctcgattcaaattcttcgaatgaatcgaa |
9573330 |
T |
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| Q |
315 |
ctcgagatttgaaagtgttgatgaagagaagggggagagtggggagaaga |
364 |
Q |
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| T |
9573329 |
ttcgagatttgaaagtgttgatgaagagaaggtggagagtgtggagaaga |
9573280 |
T |
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