View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21346_high_13 (Length: 267)
Name: NF21346_high_13
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 8432155 - 8431974
Alignment:
| Q |
1 |
aatatgatctatgatgtaggaaaatcaatactatatcattggcagnnnnnnncttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaat |
100 |
Q |
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| T |
8432155 |
aatatgatctatgatgtaggaaaatcaatactatatcattggtagtttttttcttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaat |
8432056 |
T |
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| Q |
101 |
taagcttgcctagctaaatattacatgacttgatctatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
182 |
Q |
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| T |
8432055 |
taagcttgcctagctaaatattacatgaattgatatatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
8431974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 8437663 - 8437594
Alignment:
| Q |
54 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
123 |
Q |
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||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||||| |
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| T |
8437663 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8437594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 8440888 - 8440819
Alignment:
| Q |
54 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
123 |
Q |
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||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||||| |
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| T |
8440888 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8440819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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