View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21346_high_17 (Length: 222)
Name: NF21346_high_17
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 20075774 - 20075584
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20075774 |
attattcttctataagaaagtttgaggtgaaacaaatgataaaaaatatttctaatcaagctgcttcttcaattgttacaaatttgagtgagatattaac |
20075675 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20075674 |
ttctctttccagtacaataatttgtaggattgctttcggtaggaggtacgaggatgaaggaactaagaggagtaaattccagggaatgttg |
20075584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 9401425 - 9401236
Alignment:
| Q |
14 |
ttattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgact |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| ||||| |||||||| ||| | |||||||| ||||||||||||||||||| |||| | | |
|
|
| T |
9401425 |
ttattcctctataagaaagtttgaggtgaaagaaatgatcaaaaaaatttctaacaatgttacttcttcagttgttacaaatttgagtgaattattaatt |
9401326 |
T |
|
| Q |
114 |
tctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaacta-agagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||| |||||| |||||||| || |||||||| |||| |||| ||||||||||| ||||||||| |
|
|
| T |
9401325 |
tctctctcaagtaaaataatttgtagggttgcttttgggaggaggtatgaagatgaagg-actagagagtagtaaattccatggaatgttg |
9401236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 8916581 - 8916388
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8916581 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
8916482 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaac---taagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| || || ||||||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8916481 |
ttctctctctagtacaataatttgtaggattgctttcggtaggagttatgaagatgaaggaactaataagaggagtaaattccatggaatgttg |
8916388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 8905737 - 8905544
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8905737 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctacttcttcaaatgttacaaatttgagtgagatattgac |
8905638 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaac---taagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| || || ||||||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8905637 |
ttctctctctagtacaataatttgtaggattgctttcggtaggagttatgaagatgaaggaactaataagaggagtaaattccatggaatgttg |
8905544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 8930421 - 8930231
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8930421 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaaatgttacaaatttgagtgagatattgac |
8930322 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||| |||||| | |||||||||||| |||| | | |||| ||||||||||| ||||||||| |
|
|
| T |
8930321 |
ttctctatatagtacaatgatttgtaggattgcttttgggaagaggtacgaggaacaagggattgagaggagtaaattccatggaatgttg |
8930231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 9027452 - 9027642
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
9027452 |
attattcatctataagaaagtttgaggtgaagaaaatgatcaaaaaaatttcagggcatgctagttcttcaagtgttacaaatttgagtgagttattgat |
9027551 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
||| || || ||||| |||||||||||||||| |||||| || || || ||||||||||||||| | ||||||| || || ||||||||| |
|
|
| T |
9027552 |
ttcgctatcaagtactataatttgtaggattgcttttgggagaagctatgaggatgaaggaactgaaagaagtaggtttcatggaatgttg |
9027642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 8975700 - 8975890
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| |||| ||||| |||| || |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
8975700 |
attattcctctataagaaagtttgaggtgaagaaaatgatcaaaagaatttcagggcatgttgattcttcaagtgttacaaatttgagtgagttattgat |
8975799 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
||| || || ||||| |||||||||||||||| |||||| || || || ||||||||||||||| | ||||||| || || ||||||||| |
|
|
| T |
8975800 |
ttcgctatcaagtactataatttgtaggattgcttttgggagaagctatgaggatgaaggaactgaaagaagtaggtttcatggaatgttg |
8975890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 9002411 - 9002238
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||| | |||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
9002411 |
attattcttctataagaaattttgaggtgaagaaaatgataaaaaaaatttcagggcatgttagttcttcaagtgtttcaaatatgagtgagatattgat |
9002312 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagta |
186 |
Q |
| |
|
||||| || ||||| |||||||| ||||||| |||||| || || || || |||||||||||| ||||||||| |
|
|
| T |
9002311 |
atctctttcaagtacgataatttgcaggattgtttttgggagaagctatgaagatgaaggaactgagagaagta |
9002238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 8972349 - 8972159
Alignment:
| Q |
13 |
attattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgac |
112 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||||||| ||||| ||||| |||| || |||||||| ||||||||||||||||||| | |||| |
|
|
| T |
8972349 |
attattcctccataagaaagtttgaggtgaagaaaatgatcaaaaaaatttcagggcatgttgattcttcaagtgttacaaatttgagtgaggtgttgat |
8972250 |
T |
|
| Q |
113 |
ttctctctctagtacaataatttgtaggattggttttggtaggaggtacgaggatgaaggaactaagagaagtaaattccagggaatgttg |
203 |
Q |
| |
|
|||||| || ||||| |||||||||||||||| |||||| || || || ||| |||| |||||| ||| ||||| ||| || | ||||||| |
|
|
| T |
8972249 |
ttctctatcaagtactataatttgtaggattgcttttgggagaagctatgagaatgatggaactgagaaaagtagatttcatgaaatgttg |
8972159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 8952613 - 8952749
Alignment:
| Q |
15 |
tattcttctataagaaagtttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgactt |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||| ||||| ||||||| |||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
8952613 |
tattcttctataagaatatttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgattt |
8952712 |
T |
|
| Q |
115 |
ctctctctagtacaataatttgtaggattggttttgg |
151 |
Q |
| |
|
| ||||| ||||| ||||||||||| |||| |||||| |
|
|
| T |
8952713 |
cactctcaagtactataatttgtagaattgcttttgg |
8952749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University