View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21346_high_2 (Length: 560)
Name: NF21346_high_2
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 29725657 - 29726069
Alignment:
| Q |
1 |
taataacatgttggcgatgcctaaagaaaattgtgacgagatcgcaatgtgtttgtcagactcgttatttt-atgaatcaatgcatcagtcacagccaca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29725657 |
taataacatgttggcgatgcctaaagaaaattgtgacgagatcgcaatgtgtttgtcagactcgttatttttatgaatcaatgcatcagtcacagccaca |
29725756 |
T |
|
| Q |
100 |
cagaaataacattcacaaagagtaaggtggagaatatcaagggagaatgaacaactgatccagcccgtatccaagaccttctatcaggtacccgtgcact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29725757 |
cagaaataacattcacaaagagtaaggtggagaatatcaagggagaatgaacaactgatccagccagtatccaagaccttctatcaggtacccgtgcact |
29725856 |
T |
|
| Q |
200 |
taacgtggggtatcaatacagcaacaaaatttagttaatcatttgacatgtacaaacttctataattgtagaaagtcacatatctttaaacaccctgaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29725857 |
taacgtggggtatcaatacagcaacaaaatttagttaatcatttgacatgtacaaacttctataattgtagaaagtcacatatctttaaataccctgaaa |
29725956 |
T |
|
| Q |
300 |
ggcaaagtaactgtattcttcatcagcttaacacgaaaaccaaaagaatttgattaccaatctagacattttggaactggtcacagtctgcacattcacc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29725957 |
ggcaaagtaactgtattcttcatcagcttaacacgaaaaccaaaagaatttgattaccaatctagacattttggaactggtcacagtctgcacattcacc |
29726056 |
T |
|
| Q |
400 |
aaatcccaaggcc |
412 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29726057 |
aaatcccaaggcc |
29726069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 29726136 - 29726201
Alignment:
| Q |
479 |
ggtaactgatgattgagagatgaagatagttccaacctgaaaaattagaaggatgaagttcctagt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29726136 |
ggtaactgatgattgagagatgaagatagttcaaacctgaaaaattagaaggatgaagttcctagt |
29726201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University