View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21346_low_1 (Length: 588)

Name: NF21346_low_1
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21346_low_1
NF21346_low_1
[»] chr2 (19 HSPs)
chr2 (30-299)||(31362445-31362714)
chr2 (128-266)||(31257790-31257928)
chr2 (139-251)||(31376722-31376834)
chr2 (134-251)||(31283570-31283687)
chr2 (34-227)||(31416418-31416608)
chr2 (128-299)||(31310082-31310253)
chr2 (138-235)||(31294993-31295090)
chr2 (350-486)||(31416113-31416252)
chr2 (134-235)||(31389007-31389108)
chr2 (340-462)||(31295241-31295363)
chr2 (364-465)||(31389170-31389271)
chr2 (364-453)||(31310519-31310608)
chr2 (370-529)||(31376936-31377099)
chr2 (359-476)||(31258069-31258192)
chr2 (420-486)||(31283896-31283965)
chr2 (372-453)||(31362837-31362918)
chr2 (37-105)||(31388928-31388996)
chr2 (32-111)||(31257685-31257764)
chr2 (31-105)||(31294871-31294945)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 5e-70; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 31362445 - 31362714
Alignment:
Q  30 acggaaaagagacttacattgaaacaacgtggcagaagttctcaccaggaatagagcagtcacaagtgacattgttaactacaatcggtaagggaatggt 129  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||  |||| ||   |   || ||||     
T  31362445 acggaaaa-agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgat---tttcggtatggg 31362540  T
Q  130 aggcgtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctctaaa 229  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  31362541 aggcgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacttcaagagctttctctaaa 31362640  T
Q  230 t----atacaattgagagttatcagccaagtactgaaaaatcttctaaactacacatacatttcataaaatata 299  Q
    |    ||||||||||||| ||||||  ||||||||||||| ||||||||||||||| |||| |||| |||||||    
T  31362641 tatacatacaattgagagctatcagataagtactgaaaaaacttctaaactacacacacatgtcatcaaatata 31362714  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 31257790 - 31257928
Alignment:
Q  128 gtaggcgtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctcta 227  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||    
T  31257790 gtaggtgtagcccagttaggtttgttgctgcatggatcagtgtcgaagttccaatctttcttaccaagtgatttagctataacttcaagaactttctcta 31257889  T
Q  228 aatatacaattgagagttatcagccaagtactgaaaaat 266  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  31257890 aatatacaattgagagctatcagctaagtactgaaaaat 31257928  T

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Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 31376722 - 31376834
Alignment:
Q  139 ccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctctaaatatacaatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31376722 ccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctatactttcaagagctttctctaaatatacaatt 31376821  T
Q  239 gagagttatcagc 251  Q
    ||||| |||||||    
T  31376822 gagagctatcagc 31376834  T

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Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 31283570 - 31283687
Alignment:
Q  134 gtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctctaaatata 233  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  31283570 gtaaaccatttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctatactttcaagagctttctctaaatata 31283669  T
Q  234 caattgagagttatcagc 251  Q
    |||||||||| |||||||    
T  31283670 caattgagagctatcagc 31283687  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 31416608 - 31416418
Alignment:
Q  34 aaaagagacttacattgaaacaacgtggcagaagttctcaccaggaatagagcagtcacaagtgacattgttaactacaa---tcggtaagggaatggta 130  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||| || |||||||| |||| | ||||||||  |||| |   ||||||      | |||    
T  31416608 aaaagagacttacatttcaacaacatggcagaagttgtcaccagcaacagagcagttacaaattacattgttctctacgacattcggta------tcgta 31416515  T
Q  131 ggcgtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctcta 227  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  31416514 ggcgtaacccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacttcaagagctttctcta 31416418  T

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Target: chr2; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 128 - 299
Target Start/End: Original strand, 31310082 - 31310253
Alignment:
Q  128 gtaggcgtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctcta 227  Q
    ||||||||  |||||||||  |||||||||||||||||||||  ||||||||||||| |||| ||||||||||| |||||| |||||||||||||| |||    
T  31310082 gtaggcgtggcccagttagaattgttgctgcatggatcaatgctgaagttccaatccgtcttaccaagtgatttagctatatcttcaagagctttcacta 31310181  T
Q  228 aatatacaattgagagttatcagccaagtactgaaaaatcttctaaactacacatacatttcataaaatata 299  Q
    |||||| |||| |||| ||||||  |||||||||||||| || ||||||||||| |||| |||| |||||||    
T  31310182 aatataaaatttagagctatcagttaagtactgaaaaatattttaaactacacacacatgtcatcaaatata 31310253  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 31294993 - 31295090
Alignment:
Q  138 cccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctctaaatataca 235  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  31294993 cccagttaggttggttgctacatggatcaatgtcgaagttccaatcattcttaccaagtgatttagctataacttcaagagctttctctacatataca 31295090  T

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Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 350 - 486
Target Start/End: Complemental strand, 31416252 - 31416113
Alignment:
Q  350 gggagatatggtataaataaatatcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaatgagtgaaagg 449  Q
    ||||| || |||| ||||| |||||||||||||||||||||||| |||| | ||  || ||||||| | ||||||||||||||||| |||||||||||||    
T  31416252 gggagctaaggtagaaatatatatcatactttcatcagggtgaatagtagtggcagcaaaagctgtaagagatatgaaccaaatggaaatgagtgaaagg 31416153  T
Q  450 aagagaagttga---gaagtgttcatcttaatattaacaa 486  Q
    ||||||| ||||   |||||||||||||||||||||||||    
T  31416152 aagagaaattgagaggaagtgttcatcttaatattaacaa 31416113  T

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Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 31389007 - 31389108
Alignment:
Q  134 gtaacccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctataacttcaagagctttctctaaatata 233  Q
    |||| |||| |||||| ||||||||| ||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  31389007 gtaaaccagataggttggttgctgcaaggatcgatgtcgaagttccaatctttcttaccaagtgattcagctatatcttcaagagctttctctaaatata 31389106  T
Q  234 ca 235  Q
    ||    
T  31389107 ca 31389108  T

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Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 462
Target Start/End: Original strand, 31295241 - 31295363
Alignment:
Q  340 tttatttttagggagatatggtataaataaatatcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaat 439  Q
    |||||| || ||||| ||||||  |||||||||||||||||||||||||||||| |||| ||||| || ||||||||| ||||||| ||||||||  |||    
T  31295241 tttattatttgggagctatggtggaaataaatatcatactttcatcagggtgaatagtagtagctccaaaagctgttagagatatggaccaaatgagaat 31295340  T
Q  440 gagtgaaaggaagagaagttgag 462  Q
    || ||||||||||| || |||||    
T  31295341 gaatgaaaggaagaaaaattgag 31295363  T

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Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 465
Target Start/End: Original strand, 31389170 - 31389271
Alignment:
Q  364 aaataaatatcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaatgagtgaaaggaagagaagttgaga 463  Q
    ||||| |||||||||||||||||||||||| |||| | ||| || ||||||||| |||||| ||||||||| || |||  ||||||||||||| ||||||    
T  31389170 aaatacatatcatactttcatcagggtgaatagtagttgctccaaaagctgttagagatataaaccaaatgacactgaacgaaaggaagagaaattgaga 31389269  T
Q  464 ag 465  Q
    ||    
T  31389270 ag 31389271  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 453
Target Start/End: Original strand, 31310519 - 31310608
Alignment:
Q  364 aaataaatatcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaatgagtgaaaggaaga 453  Q
    ||||| ||||||||||||| || ||||||| |||| |||||||| || |||  | |||||||||||||||||||||||| ||||| ||||    
T  31310519 aaatagatatcatactttcgtcggggtgaatagtagtagcttcaaaacctggaagagatatgaaccaaatggcaatgagagaaagaaaga 31310608  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 529
Target Start/End: Original strand, 31376936 - 31377099
Alignment:
Q  370 atatcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaatgagtgaaaggaagagaagttga---gaagt 466  Q
    ||||||||||||| || ||||||| |||||||| | || || | |||||||||||||||||||||  |||||| |||||||||| ||  |||   |||||    
T  31376936 atatcatactttcgtcggggtgaatagtattagatccaaaaacagttaaagatatgaaccaaatgagaatgagggaaaggaagaaaaaatgagaggaagt 31377035  T
Q  467 gttcatcttaatattaacaataaaaagaga-agttcagataggttaaaaatttagaggtagaga 529  Q
     |||||||||| | || |||  |||||||| ||||||||||  | || ||||||| ||||||||    
T  31377036 attcatcttaaaactatcaaggaaaagagagagttcagatatatcaataatttaggggtagaga 31377099  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 31258069 - 31258192
Alignment:
Q  359 ggtataaataaatatcatactttcatcagggtgaagagtattagcttcagaa---gctgttaaagatatgaaccaaatggcaatgagtgaaaggaagaga 455  Q
    |||| ||||| ||||||||||||| || ||||||| |||||||||| ||  |   ||||| | |||||||||||||||   |||||||||||||||||||    
T  31258069 ggtagaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaattataatgagtgaaaggaagaga 31258168  T
Q  456 agttga---gaagtgttcatctta 476  Q
    | ||||   |||||||||||||||    
T  31258169 aattgagatgaagtgttcatctta 31258192  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 486
Target Start/End: Original strand, 31283896 - 31283965
Alignment:
Q  420 gatatgaaccaaatggcaatgagtgaaaggaagagaagttga---gaagtgttcatcttaatattaacaa 486  Q
    |||||| |||||||  ||||||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  31283896 gatatgtaccaaataacaatgagtgaaaggaagagaaattgagatgaagtgttcatcttaatattaacaa 31283965  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 31362837 - 31362918
Alignment:
Q  372 atcatactttcatcagggtgaagagtattagcttcagaagctgttaaagatatgaaccaaatggcaatgagtgaaaggaaga 453  Q
    ||||||||||| || ||||||| |||||||||| || ||| ||||  |||||| |||||||||  |||||||||||||||||    
T  31362837 atcatactttcgtcggggtgaatagtattagctccaaaagatgtttgagatatcaaccaaatgagaatgagtgaaaggaaga 31362918  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 31388928 - 31388996
Alignment:
Q  37 agagacttacattgaaacaacgtggcagaagttctcaccaggaatagagcagtcacaagtgacattgtt 105  Q
    ||||||||||||||||||||| ||||||||||| ||||| | || ||||||||  || |||||||||||    
T  31388928 agagacttacattgaaacaacatggcagaagttgtcaccggcaacagagcagttgcaggtgacattgtt 31388996  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 31257685 - 31257764
Alignment:
Q  32 ggaaaagagacttacattgaaacaacgtggcagaagttctcaccaggaatagagcagtcacaagtgacattgttaactac 111  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||| || |  |||||  || ||||||||||| |||||    
T  31257685 ggaaaatagacttacattgaaacaacatggcagaagttgtcaccagcaacactgcagttgcaggtgacattgttcactac 31257764  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 31294871 - 31294945
Alignment:
Q  31 cggaaaagagacttacattgaaacaacgtggcagaagttctcaccaggaatagagcagtcacaagtgacattgtt 105  Q
    ||||||| |||||||||||  |||||| ||||||||||| ||| ||| ||||  |||||  ||||||||||||||    
T  31294871 cggaaaatagacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgtt 31294945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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