View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21346_low_10 (Length: 365)
Name: NF21346_low_10
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 50439427 - 50439763
Alignment:
| Q |
10 |
atgagcttcatctacattaaacttggttgggattcccatttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggtcaatta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
50439427 |
atgagcttcatctacattaaacttggttgggattcccatttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggataagta |
50439526 |
T |
|
| Q |
110 |
gacctccacatagaatggaatattgatgaaataaaacagttcattatgatccttctacaaagctaaaaaatttccaatatcatcgttaccaaggttccat |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50439527 |
gacccccacatagaatggaatattgatgaaataaaacagttcattatgatccttctacaaagctaaaaaatttccaatatcatcgtcaccaaggttccat |
50439626 |
T |
|
| Q |
210 |
tcaagccaaggcatgaaacctagactaaagaatttcgcccaataatatggtttgatgattggggaccaaaattttattgcttcatcacaatctcgcaaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50439627 |
tcaagccaaggcatgaaacctagactaaagaatttcgcccaataatatggtttgatgattggggaccaaaattttatagcttcatcacaatctcgcaaga |
50439726 |
T |
|
| Q |
310 |
tgcgcatattagattcaggatcctagtggcaactagg |
346 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50439727 |
tgcgcatattagattcgggatcctagtggcaactagg |
50439763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 39559320 - 39559444
Alignment:
| Q |
179 |
atttccaatatcatcgttaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcgcccaataatatggtttgatgattggggaccaa |
278 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| | ||||||||||| | || ||| |
|
|
| T |
39559320 |
atttccaatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataatctagtttgatgattagagatcaa |
39559419 |
T |
|
| Q |
279 |
aattttattgcttcatcacaatctc |
303 |
Q |
| |
|
|||| ||| || ||||||||||||| |
|
|
| T |
39559420 |
aattatatcgcctcatcacaatctc |
39559444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University