View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21346_low_3 (Length: 524)
Name: NF21346_low_3
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 47435965 - 47435702
Alignment:
| Q |
23 |
gacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtag |
122 |
Q |
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| T |
47435965 |
gacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtag |
47435866 |
T |
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| Q |
123 |
aacttgctgtggtttctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctga |
222 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435865 |
aacttgctgtggtttctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctga |
47435766 |
T |
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| Q |
223 |
atacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
286 |
Q |
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| T |
47435765 |
atacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
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