View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21346_low_6 (Length: 437)
Name: NF21346_low_6
Description: NF21346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21346_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 22138737 - 22138319
Alignment:
| Q |
18 |
aaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattggtatgaatctcaataaatcaatgcactttcgtctgtctactttgtgcaatctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
22138737 |
aaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattgttatgaatctcgataaatcaatgcacgttcgtctgtctactttgtgcaatctt |
22138638 |
T |
|
| Q |
118 |
ttattctgcgaatttcagtttctatttcaatccggtttcaagaatcttcttgttgcgtccaatttcgatcaaatgtttcatacagaggtagttagttaaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138637 |
ttattccgcgaatttcagtttctatttcaatccggtttcaagaatcttcttgttgtgtccaatttcgatcaaatgtttcatacagaggtagttagttaaa |
22138538 |
T |
|
| Q |
218 |
ttaagtatgtttagaatgacgaggatgcaatgattttgtcaaagttctaaatcgtagcttttgcaaaaatcaaagcgacacactctgtaattttgcaaaa |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138537 |
ttaagtatgtttataatgacgaggatgcaatgattttgtcaaagttctaaattgtagcttttgcaaaaatcaaagcgacacactctgtaattttgcaaaa |
22138438 |
T |
|
| Q |
318 |
ttcgcatagtcactgttgtcaacccatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattccattcgattgactata |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22138437 |
ttcgcatagtcactgttgtcaactcatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattacattcgattgactata |
22138338 |
T |
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| Q |
418 |
actcttcggtcaatgtctc |
436 |
Q |
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| T |
22138337 |
actcttcgttcaatgtctc |
22138319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 40506246 - 40505828
Alignment:
| Q |
18 |
aaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattggtatgaatctcaataaatcaatgcactttcgtctgtctactttgtgcaatctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
40506246 |
aaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattgttatgaatctcgataaatcaatgcacgttcgtctgtctactttgtgcaatctt |
40506147 |
T |
|
| Q |
118 |
ttattctgcgaatttcagtttctatttcaatccggtttcaagaatcttcttgttgcgtccaatttcgatcaaatgtttcatacagaggtagttagttaaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506146 |
ttattccgcgaatttcagtttctatttcaatccggtttcaagaatcttcttgttgtgtccaatttcgatcaaatgtttcatacagaggtagttagttaaa |
40506047 |
T |
|
| Q |
218 |
ttaagtatgtttagaatgacgaggatgcaatgattttgtcaaagttctaaatcgtagcttttgcaaaaatcaaagcgacacactctgtaattttgcaaaa |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506046 |
ttaagtatgtttataatgacgaggatgcaatgattttgtcaaagttctaaattgtagcttttgcaaaaatcaaagcgacacactctgtaattttgcaaaa |
40505947 |
T |
|
| Q |
318 |
ttcgcatagtcactgttgtcaacccatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattccattcgattgactata |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40505946 |
ttcgcatagtcactgttgtcaactcatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattacattcgattgactata |
40505847 |
T |
|
| Q |
418 |
actcttcggtcaatgtctc |
436 |
Q |
| |
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|||||||| |||||||||| |
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|
| T |
40505846 |
actcttcgttcaatgtctc |
40505828 |
T |
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