View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_11 (Length: 490)
Name: NF21347_high_11
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 17798334 - 17797864
Alignment:
| Q |
1 |
cttgagatgtttaccattaatgatcaggtcaaattcatacttaacacaacatttcgaaaaatacaaaccacccgaaactactaccacagtactaagagcc |
100 |
Q |
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| T |
17798334 |
cttgagatgtttaccattaatgatcaggtcaaattcatacttaacacaacatttcgaaaaatacaaaccacccgaaactaccaccacagtactaagagcc |
17798235 |
T |
|
| Q |
101 |
atcggtggcaatttgtttcggaacctgaaggacatagatggttctcttctatattgatggaacagacttgggatagttgattctggaaaacagatatatt |
200 |
Q |
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| T |
17798234 |
atcggtggcaatttgtttcggaacctgaaggacatagatggttctcttttatattgatggaacagacttgggatagttgattctggaaaacagatatatt |
17798135 |
T |
|
| Q |
201 |
tggccccagaattgtgaagtttctgtcaatcaaatataataaaaagtttgaattaaacctgttggcactttggaatacatttattttattttaaaggaaa |
300 |
Q |
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| T |
17798134 |
tggccccagaattgtgaagtttctgtcaatcaaatataataaaatttttgaattaaacctgttggcactttggaatacatttattttattttaaaggaaa |
17798035 |
T |
|
| Q |
301 |
atttgttgatgacattaaagatatgatacctgtaacatatctttggattgggaagtcaatgatgtacagtttattaaactaagatgttttatgtttggtg |
400 |
Q |
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| T |
17798034 |
atttgttgatgacattaaagatataatacctgtaacatatctttggattgggaagtcaatgatgtacagtttattgcactaagatgttttatgtttggtg |
17797935 |
T |
|
| Q |
401 |
gcaaccctcttatttctcgaagctccgtacaattattcatagcaagtcgcttcaaagattgacatgtattg |
471 |
Q |
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| T |
17797934 |
gcagccctctgatttctcgaagctccgtacaattattcatagcaagtcccttcaaagattgacatgtattg |
17797864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 80 - 465
Target Start/End: Complemental strand, 17787138 - 17786737
Alignment:
| Q |
80 |
actaccacagtactaagagccatcggtggcaatttgtttcggaacctgaaggacatagatggttctcttctatattgatggaacaga---cttgggatag |
176 |
Q |
| |
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|||||||| |||| |||| | ||| |||| |||||||||| ||| |||||||||| | |||||| |||||||||||| ||||| | ||| ||||| |
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| T |
17787138 |
actaccaccgtacaaagatctatccgtggaaatttgtttcagaagctgaaggacagatttggttcccttctatattgacggaaccaattacttttgatag |
17787039 |
T |
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| Q |
177 |
ttgattctggaaaacagatatatttggccccagaattgtgaagtttctgtcaatcaaatataata-aaaagtttgaattaaacct-----gttggcactt |
270 |
Q |
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| T |
17787038 |
ttgatcctggaagacagatatatctgggcccagaatggtgaagcatctgccaatcaaataaaatttaaaagtgtgaattaaagtaaagtcgttgacacta |
17786939 |
T |
|
| Q |
271 |
tggaatacatttattttattttaaaggaa-aatttgttgatgacattaaagatatgatacctg------taacatatctttggattgggaagtcaatgat |
363 |
Q |
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| T |
17786938 |
tagaatacttttattttcttgtcaagggacaacttattgatgaaattaaagatatgatacctgattcagtaacgtatccttagattgggaagtcaatgat |
17786839 |
T |
|
| Q |
364 |
gtacagtttattaaactaagatgttttatgtttggtggcaaccctcttatttctcgaagctccgtacaattattcatagcaagtcgcttcaaagattgac |
463 |
Q |
| |
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||||| |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | || |||| ||||||||| |||| |
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| T |
17786838 |
gtacaatttattgcactaatatgttttatgtttggtggcaggcctctgatttctcgaagctccatacaattattgaaagtaagttccttcaaagagtgac |
17786739 |
T |
|
| Q |
464 |
at |
465 |
Q |
| |
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|| |
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|
| T |
17786738 |
at |
17786737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 17804047 - 17803950
Alignment:
| Q |
343 |
ttggattgggaagtcaatgatgtacagtttattaaactaagatgttttatgtttggtggcaaccctcttatttctcgaagctccgtacaattattcat |
440 |
Q |
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|||||||||||||||| |||| ||| |||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
17804047 |
ttggattgggaagtcagtgattcacaatttattgcaccaagatgttttatgtttggtggcaggcctctgatttctcgaagctccgtacaattattcat |
17803950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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