View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_2 (Length: 700)
Name: NF21347_high_2
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 19 - 662
Target Start/End: Complemental strand, 14869481 - 14868838
Alignment:
| Q |
19 |
caatccggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869481 |
caatccggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagt |
14869382 |
T |
|
| Q |
119 |
gttcaatagagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaaggata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14869381 |
gttcaatagagttcattgcagaatgagcaaagtaacttccactaatacaaattaaccttggaattcccaattcatcagcaacatcaacactccaaggata |
14869282 |
T |
|
| Q |
219 |
gaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869281 |
gaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatc |
14869182 |
T |
|
| Q |
319 |
tcattaggagtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctag |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869181 |
tcattaggagtgtcggcgttgaagctttccattcctcgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctag |
14869082 |
T |
|
| Q |
419 |
aatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctac |
518 |
Q |
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| T |
14869081 |
aatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctac |
14868982 |
T |
|
| Q |
519 |
tacgaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctgg |
618 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868981 |
tacaaaaatgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctgg |
14868882 |
T |
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| Q |
619 |
tttttgttttaaggcaaaggttgataagaggaagagaaaatgtg |
662 |
Q |
| |
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| T |
14868881 |
tttttgttttaaggcaaaggttgataagaggaagagaaaatgtg |
14868838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 630
Target Start/End: Original strand, 16909187 - 16909800
Alignment:
| Q |
19 |
caatccggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagt |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||| || |||||| || | |
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| T |
16909187 |
caatccggaagttgcaaacgcgtcatttccacgttgtgaggcaacccaggaagcagaaaacttacgctattcgatttaactttggcatgaggttcaaatt |
16909286 |
T |
|
| Q |
119 |
gttcaatagagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaaggata |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16909287 |
gttcaatagagttcattgcagaatgagcaaagtaacttccaccaatacaaatcaaccttggaattcccaattcatcagcaacatcaacactccaaggata |
16909386 |
T |
|
| Q |
219 |
gaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatc |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |
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| T |
16909387 |
aaacatgtcagtgactatgaaatcaggtttcatgtcacgaaatagttgtgtgaattgctcttggagaatggcaagtccctgatagattttggaaattatg |
16909486 |
T |
|
| Q |
319 |
tcattaggagtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctag |
418 |
Q |
| |
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|| ||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || | |
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|
| T |
16909487 |
tctttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgacaatgtgagttctaatggaccgaccgcgacttg |
16909586 |
T |
|
| Q |
419 |
aatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctac |
518 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
16909587 |
aatcgtggtcgatggaggtttgaaaaatggctgcatttgctggtgtggtgattatggtaacatccacattatgcatagcaaaaagccttgctatgtctac |
16909686 |
T |
|
| Q |
519 |
tacgaaaatgaggtgac--tttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatct |
616 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||| |||| | |
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| T |
16909687 |
tacgaaaatgaggtgactttttttgatataaagggaagaaaaacagcttttaacattgtttcttcttcaactttcacaccaaaggattccattagaaatt |
16909786 |
T |
|
| Q |
617 |
ggtttttgttttaa |
630 |
Q |
| |
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| ||||||||||| |
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| T |
16909787 |
agattttgttttaa |
16909800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 12611293 - 12611241
Alignment:
| Q |
463 |
gtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtc |
515 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
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| T |
12611293 |
gtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccatgtc |
12611241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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