View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_high_30 (Length: 345)

Name: NF21347_high_30
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_high_30
NF21347_high_30
[»] chr4 (2 HSPs)
chr4 (101-264)||(33248568-33248731)
chr4 (275-328)||(33248439-33248492)
[»] chr6 (2 HSPs)
chr6 (101-258)||(20644561-20644718)
chr6 (275-328)||(20644432-20644485)
[»] chr7 (2 HSPs)
chr7 (24-104)||(12632924-12633001)
chr7 (24-59)||(37162907-37162942)
[»] chr5 (1 HSPs)
chr5 (24-108)||(17512029-17512110)
[»] chr2 (2 HSPs)
chr2 (101-130)||(3944215-3944244)
chr2 (24-108)||(8151665-8151746)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 33248731 - 33248568
Alignment:
Q  101 cccttgctagctttttctaataaaatctcatatagatacattttttatgcttaacgtgctatcttgtcttatggattaataagaaaaggatttgaatttg 200  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33248731 cccttgctagctttttctaataaaatcccagatagatacatttttaatgcttaacgtgctatcttgtcttatggattaataagaaaaggatttgaatttg 33248632  T
Q  201 ttaatcttagatctttatgggattgtttggttttagattgaagaaataaatccatgtaatagga 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33248631 ttaatcttagatctttatgggattgtttggttttagattgaagaaataaatccatgtaatagga 33248568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 33248492 - 33248439
Alignment:
Q  275 attaaccctatattaaataaaatgtaattttgtttaaaaaatgattcttctttt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33248492 attaaccctatattaaataaaatgtaattttgtttaaaaaatgattcttctttt 33248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 20644718 - 20644561
Alignment:
Q  101 cccttgctagctttttctaataaaatctcatatagatacattttttatgcttaacgtgctatcttgtcttatggattaataagaaaaggatttgaatttg 200  Q
    |||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20644718 cccttgctagctttttctaataaaatctcagatcgatacattgttgatgcttaacgtgctatcttgtcttatggattaataagaaaagggtttgaatttg 20644619  T
Q  201 ttaatcttagatctttatgggattgtttggttttagattgaagaaataaatccatgta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20644618 ttaatcttagatctttatgggattgtttggttttagattgaaggaataaatccatgta 20644561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 20644485 - 20644432
Alignment:
Q  275 attaaccctatattaaataaaatgtaattttgtttaaaaaatgattcttctttt 328  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20644485 attaaccctatattaaataaaatgttattttgtttaaaaaatgattcttctttt 20644432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 12633001 - 12632924
Alignment:
Q  24 aaaagaaacaaagcagaagcagaacacgttcccttgcttcttctccttcaaaacgtgttatgctttccctcacttctccct 104  Q
    ||||||||||||||||||||||||| ||  | | | ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  12633001 aaaagaaacaaagcagaagcagaacgcg--cacat-cttcttctccttcaaaacgcgttctgcgttccctcacttctccct 12632924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 37162907 - 37162942
Alignment:
Q  24 aaaagaaacaaagcagaagcagaacacgttcccttg 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  37162907 aaaagaaacaaagcagaagcagaacacgttcccttg 37162942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 17512029 - 17512110
Alignment:
Q  24 aaaagaaacaaagcagaagcagaacacgttcccttgcttcttctccttcaaaacgtgttatgctttccctcacttctcccttgct 108  Q
    ||||||||||||||||||||||||| ||  | | | |||||||||||| |||||| |||  || |||||||||||||||||||||    
T  17512029 aaaagaaacaaagcagaagcagaacgcg--cacat-cttcttctcctttaaaacgcgttcggcgttccctcacttctcccttgct 17512110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 3944244 - 3944215
Alignment:
Q  101 cccttgctagctttttctaataaaatctca 130  Q
    ||||||||||||||||||||||||||||||    
T  3944244 cccttgctagctttttctaataaaatctca 3944215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 8151665 - 8151746
Alignment:
Q  24 aaaagaaacaaagcagaagcagaacacgttcccttgcttcttctccttcaaaacgtgttatgctttccctcacttctcccttgct 108  Q
    ||||||||||||||||||||| ||| ||  | | | ||||||||||||||||||| |||  || |||||||| ||||||||||||    
T  8151665 aaaagaaacaaagcagaagcaaaacgcg--cacat-cttcttctccttcaaaacgcgttcggcgttccctcatttctcccttgct 8151746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University