View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_39 (Length: 307)
Name: NF21347_high_39
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 9471032 - 9470754
Alignment:
| Q |
13 |
aatatcaacagtttgagagacacatgtgtgtttatattaacagatataactaaacattataatgtttcaattttcttcnnnnnnnnntgtttcaatttga |
112 |
Q |
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| T |
9471032 |
aatatcaacagtttgagagacacatgtgtgtttatattaacagatataactaaacattataatgtttcaattttcttcaaaaaaaaatgtttcaatttga |
9470933 |
T |
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| Q |
113 |
aatctgcatgtcaacttgaacataccaataactattatgccattcaaaccaacaaacagattgagcagcgtgtatcgctcatcagtggttctactcaggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470932 |
aatctgcatgtcaacttgaacataccaataactattatgccattcaaaccaacaaacagattgagcagcgtgtatcgctcatcagtggttctactcaggc |
9470833 |
T |
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| Q |
213 |
acctagtttcttctgtacgaagcatataaagctaataacatcacatacaaatggaattcgcccgtacaaatacgggaac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9470832 |
acctagtttcttctgtacgaagcatataaagctaataacatcacatacaaattgaattcgcccgtacaaatacgggaac |
9470754 |
T |
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