View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_high_5 (Length: 583)

Name: NF21347_high_5
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_high_5
NF21347_high_5
[»] chr5 (13 HSPs)
chr5 (9-564)||(2826938-2827494)
chr5 (37-174)||(13362799-13362936)
chr5 (42-174)||(28070057-28070189)
chr5 (33-161)||(23335601-23335730)
chr5 (87-161)||(16668743-16668817)
chr5 (27-174)||(25017121-25017253)
chr5 (88-161)||(18465506-18465579)
chr5 (33-104)||(42512273-42512344)
chr5 (88-161)||(8948932-8949003)
chr5 (107-178)||(34329152-34329223)
chr5 (9-75)||(34329247-34329311)
chr5 (131-174)||(42512228-42512271)
chr5 (111-161)||(33868198-33868248)
[»] chr7 (17 HSPs)
chr7 (9-174)||(46573369-46573536)
chr7 (27-174)||(30428902-30429049)
chr7 (9-174)||(15974805-15974972)
chr7 (27-174)||(46024056-46024205)
chr7 (66-161)||(33797973-33798068)
chr7 (88-174)||(5757416-5757502)
chr7 (88-161)||(32090620-32090693)
chr7 (107-157)||(48691038-48691088)
chr7 (9-75)||(48691112-48691180)
chr7 (11-75)||(48305356-48305422)
chr7 (107-174)||(48690924-48690991)
chr7 (104-174)||(12279670-12279740)
chr7 (104-178)||(12279770-12279844)
chr7 (113-161)||(44141226-44141274)
chr7 (107-174)||(28396751-28396818)
chr7 (9-75)||(28396842-28396910)
chr7 (112-174)||(48305265-48305327)
[»] chr6 (8 HSPs)
chr6 (9-161)||(24737562-24737714)
chr6 (9-174)||(33346240-33346407)
chr6 (27-161)||(877250-877384)
chr6 (88-174)||(29157255-29157341)
chr6 (88-161)||(18611231-18611304)
chr6 (104-174)||(34399670-34399740)
chr6 (88-153)||(15034920-15034990)
chr6 (128-174)||(35119264-35119310)
[»] chr4 (15 HSPs)
chr4 (9-184)||(637873-638048)
chr4 (9-174)||(26447281-26447448)
chr4 (9-174)||(45256004-45256173)
chr4 (9-161)||(51836959-51837114)
chr4 (33-174)||(27764269-27764410)
chr4 (27-174)||(4168387-4168536)
chr4 (33-174)||(21097169-21097310)
chr4 (33-174)||(22181140-22181281)
chr4 (33-174)||(38485567-38485710)
chr4 (66-174)||(36621629-36621737)
chr4 (88-161)||(50563679-50563752)
chr4 (27-111)||(18923351-18923435)
chr4 (113-161)||(6386516-6386564)
chr4 (91-135)||(48077817-48077861)
chr4 (127-177)||(1729604-1729654)
[»] chr3 (15 HSPs)
chr3 (9-174)||(50754035-50754200)
chr3 (9-174)||(52987519-52987686)
chr3 (9-174)||(7045170-7045336)
chr3 (9-174)||(51362308-51362474)
chr3 (9-174)||(19385188-19385351)
chr3 (33-174)||(8718130-8718271)
chr3 (33-174)||(9070017-9070158)
chr3 (35-174)||(39099226-39099365)
chr3 (64-178)||(16277340-16277454)
chr3 (88-161)||(23699370-23699443)
chr3 (88-161)||(23717825-23717898)
chr3 (88-161)||(23736281-23736354)
chr3 (104-161)||(17627197-17627254)
chr3 (88-133)||(23755349-23755394)
chr3 (9-64)||(31852245-31852302)
[»] chr8 (14 HSPs)
chr8 (9-174)||(4836570-4836737)
chr8 (9-174)||(4842015-4842182)
chr8 (27-174)||(32987334-32987481)
chr8 (9-174)||(7058143-7058310)
chr8 (33-174)||(39022004-39022145)
chr8 (9-174)||(8550533-8550700)
chr8 (33-174)||(15260746-15260887)
chr8 (66-161)||(7614110-7614205)
chr8 (9-127)||(2750101-2750223)
chr8 (88-161)||(15181833-15181906)
chr8 (9-75)||(1208829-1208895)
chr8 (9-60)||(39658412-39658463)
chr8 (107-174)||(1208738-1208805)
chr8 (115-156)||(1671850-1671891)
[»] chr1 (10 HSPs)
chr1 (9-161)||(22348081-22348235)
chr1 (27-174)||(18056813-18056960)
chr1 (9-161)||(179650-179804)
chr1 (37-161)||(23319984-23320108)
chr1 (10-161)||(8402179-8402334)
chr1 (33-174)||(45889625-45889766)
chr1 (66-161)||(30802438-30802533)
chr1 (88-161)||(37639384-37639457)
chr1 (88-161)||(35198131-35198204)
chr1 (88-174)||(16115880-16115966)
[»] scaffold0097 (1 HSPs)
scaffold0097 (27-174)||(13642-13789)
[»] chr2 (11 HSPs)
chr2 (27-174)||(20709803-20709950)
chr2 (9-174)||(18297980-18298147)
chr2 (9-174)||(25192921-25193088)
chr2 (88-162)||(4281738-4281812)
chr2 (88-161)||(25995329-25995402)
chr2 (107-161)||(14551288-14551342)
chr2 (9-75)||(4579695-4579763)
chr2 (107-161)||(4579787-4579841)
chr2 (88-148)||(43822409-43822469)
chr2 (111-161)||(5098759-5098809)
chr2 (113-161)||(36636912-36636960)
[»] scaffold0194 (1 HSPs)
scaffold0194 (27-161)||(27649-27785)
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-174)||(25094-25268)
[»] scaffold0337 (1 HSPs)
scaffold0337 (104-178)||(7042-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (105-174)||(10642-10711)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 564
Target Start/End: Original strand, 2826938 - 2827494
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2826938 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 2827037  T
Q  109 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataaagataacttttgcttgaaaatatgaccgctcccc 208  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||    
T  2827038 agcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtggataaagataacttttgcgtgaaaatataaccgctcccc 2827137  T
Q  209 aaggaagagttttaagtcaaatagaaatctctcgctaagcacaaaacatgatttgatatttatgttaagagagtcggataggcaacaccatttgtcaaag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2827138 aaggaagagttttaagtcaaatagaaatctctcgctaagcacaaaacaagatttgatatttatgttaagagagtcggataggcaacaccatttgtcaaag 2827237  T
Q  309 tttttctaccattggatgtttgacaacgtgtcgtagccgtaccgtcaagctaccgtatctccatttttacaagaatacaaatttgtca-tttgtcgccgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2827238 tttttctaccattggatgtttgacaacgtgtcgtagccgtaccgtcaagcaaccgtatctccatttttacaagaatacaaatttgtcattttgtcgccgt 2827337  T
Q  408 ttgaaataattcgacctattaattatgttttatttttaattattgttatgaaaaattaatatatggttgggtgaatccgaagatttggttttagttcaac 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2827338 ttgaaataattcgacctattaattatgttttatttttaattattgttatgaaaaattaatatatggttgggtgaatccgaagatttggttttagttcaac 2827437  T
Q  508 caagtgagttttaaattcaatcaagtgattgtttaatgattttttctatgacaaata 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2827438 caagtgagttttaaattcaatcaagtgattgtttaatgattttttctatgacaaata 2827494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 13362936 - 13362799
Alignment:
Q  37 agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacacta 136  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13362936 agagggaaagctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacacta 13362837  T
Q  137 gatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||  |||||| ||||    
T  13362836 gatctgatggttgtgaagtgtttatgcacggtgcataa 13362799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 28070057 - 28070189
Alignment:
Q  42 gagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatct 141  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28070057 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatct 28070156  T
Q  142 gatggttgtgaagtgtttatatacggtggataa 174  Q
    ||| ||||||||||||||||  |||||| ||||    
T  28070157 gatagttgtgaagtgtttatgcacggtgcataa 28070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 23335601 - 23335730
Alignment:
Q  33 agagagagggagagctttatgtttt-agtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgta 131  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  23335601 agagagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgta 23335700  T
Q  132 cactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||| |||||||    
T  23335701 cactagatctgatggttgtgaaatgtttat 23335730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 16668743 - 16668817
Alignment:
Q  87 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 16668817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 25017121 - 25017253
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||               |||||||||| ||||  ||||||||||    
T  25017121 aattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga---------------agtttgagaaacctaaaattattacac 25017205  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  25017206 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 25017253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 18465506 - 18465579
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttat 18465579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 42512344 - 42512273
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagttt 104  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  42512344 agagagagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 8949003 - 8948932
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||| ||||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttat 8948932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 34329223 - 34329152
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataaagat 178  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaagat 34329152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 34329311 - 34329247
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  34329311 gagatgaagacccatctgaattgtagagagag--agagctttatgttttagtgagagaaatgtttga 34329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 42512271 - 42512228
Alignment:
Q  131 acactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  42512271 acactagatctgatggttgtgaagtgtttatgcacggtggataa 42512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 33868248 - 33868198
Alignment:
Q  111 cctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||| |||| | || ||| ||||||||||||||||||||    
T  33868248 cctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttat 33868198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 46573369 - 46573536
Alignment:
Q  9 gagatgaagactcatttgaattgtaga--gagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  46573369 gagatgaagactcatctgaattgtagatagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 46573468  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46573469 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataa 46573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 30429049 - 30428902
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30429049 aattgtagagagagggggagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 30428950  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||||||| |||||||  |||||| ||||    
T  30428949 gtgtacactagatctgatggttgtgaaatgtttatgcacggtgcataa 30428902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 15974805 - 15974972
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggaga--gctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||| ||||| |||||||||||  ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  15974805 gagatgaagactcatctgacttgtacagagagggagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttga 15974904  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
     ||||||| |||||||||| |||||||||| || |||||||||||||||||||||  |||||| ||||    
T  15974905 taagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgcacggtgcataa 15974972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 46024205 - 46024056
Alignment:
Q  27 aattgtagaga--gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattac 124  Q
    |||||||||||  |||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  46024205 aattgtagagatagagggagaactttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattac 46024106  T
Q  125 acgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| ||||    
T  46024105 acgtgtacactatatctgatggttgtgaagtgtttatgcacggtgcataa 46024056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 33798068 - 33797973
Alignment:
Q  66 aaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  33798068 aaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttat 33797973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 5757502 - 5757416
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 5757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 32090693 - 32090620
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| |||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttat 32090620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 48691088 - 48691038
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgt 48691038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 48691180 - 48691112
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
T  48691180 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatttttga 48691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 48305422 - 48305356
Alignment:
Q  11 gatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||| ||||||||||    
T  48305422 gatgaagactcatctgaattgtagagagagagggagagctttatgttttattgagagaaatgtttga 48305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 48690991 - 48690924
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||  |||||| ||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataa 48690924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 12279740 - 12279670
Alignment:
Q  104 tgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||| ||||||||| |||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||||    
T  12279740 tgagaggcctaggatcattacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcataa 12279670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 12279844 - 12279770
Alignment:
Q  104 tgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataaagat 178  Q
    ||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| |||||  |||||| ||||||||    
T  12279844 tgagaggcctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaagat 12279770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 44141226 - 44141274
Alignment:
Q  113 taggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  44141226 taggattattacacgtgtacactaaatcagatggttgtgaagtgtttat 44141274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 28396818 - 28396751
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||| |||||||  |||||| ||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataa 28396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 28396910 - 28396842
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||||||| ||||||| ||||||||  ||||| |||||||||||| ||||| ||||||||||    
T  28396910 gagatgaagactcatctgaattgcagagagagagggagaactttatgttttattgagagaaatgtttga 28396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 48305327 - 48305265
Alignment:
Q  112 ctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||| |||||||||||||||| |||| |||| ||||||||||  |||||| ||||    
T  48305327 ctaggattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataa 48305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 24737562 - 24737714
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 108  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||    
T  24737562 gagatgaagactcatctgaattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaaga 24737661  T
Q  109 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24737662 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 24737714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 33346240 - 33346407
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||  |||||||||    
T  33346240 gagatgaagactcatctgaattgtagagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttga 33346339  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||    
T  33346340 gaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataa 33346407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 877384 - 877250
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||    
T  877384 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatac 877285  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||  ||||| |||||||||||||||||||    
T  877284 gtgtacacctgatctaatggttgtgaagtgtttat 877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 29157341 - 29157255
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataa 29157255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 18611304 - 18611231
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttat 18611231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 34399740 - 34399670
Alignment:
Q  104 tgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataa 34399670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 15034920 - 15034990
Alignment:
Q  88 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 153  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  15034920 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 15034990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 35119310 - 35119264
Alignment:
Q  128 tgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 35119264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 638048 - 637873
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 108  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  638048 gagatgaagactcatctaaattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 637949  T
Q  109 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataaagataacttt 184  Q
    ||||||  |||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||    
T  637948 agcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaacataacttt 637873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 26447281 - 26447448
Alignment:
Q  9 gagatgaagactcatttgaattgta--gagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||| ||||||| |||||||||  |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||     
T  26447281 gagatgaggactcatctgaattgtatagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgt 26447380  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  26447381 gaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 26447448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 45256173 - 45256004
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag----ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagttt 104  Q
    ||||||||||||||| ||||||||||||||||    || ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  45256173 gagatgaagactcatctgaattgtagagagagagggggggagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagttt 45256074  T
Q  105 gagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||| ||||    
T  45256073 gaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcataa 45256004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 51836959 - 51837114
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaa-tgaaatttgatttggtgtagtttg 105  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||||    
T  51836959 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttg 51837058  T
Q  106 agaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  51837059 agaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttat 51837114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 27764410 - 27764269
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  27764410 agagagagggagaactttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtac 27764311  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||| |||||||||||  |||||| ||||    
T  27764310 actagatctgatggttgcgaagtgtttatgcacggtgcataa 27764269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 4168536 - 4168387
Alignment:
Q  27 aattgtagaga--gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattac 124  Q
    |||||||||||  ||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4168536 aattgtagagatagagtgaaagctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattac 4168437  T
Q  125 acgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    | |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  4168436 atgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4168387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 21097310 - 21097169
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| | |||| ||| |||||||||||||||     
T  21097310 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaa 21097211  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||| |||||||||||||||||||| |||||| ||||    
T  21097210 actagatctaatggttgtgaagtgtttatacacggtgcataa 21097169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 22181140 - 22181281
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||| | |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  22181140 agagagaggaaaagctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtac 22181239  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||| |||||||||||||||||| |||||  |||||| ||||    
T  22181240 actaaatctgatggttgtgaagtttttatgcacggtgcataa 22181281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 38485567 - 38485710
Alignment:
Q  33 agagagagggagagctttatgtttt--agtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgt 130  Q
    ||||||||||||| |||||||||||  ||||||| |||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||    
T  38485567 agagagagggagatctttatgttttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgt 38485666  T
Q  131 acactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||| |||||||||||||||||||| ||||||  |||||| ||||    
T  38485667 acattagatctgatggttgtgaagcgtttatgcacggtgcataa 38485710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 36621629 - 36621737
Alignment:
Q  66 aaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatac 165  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  36621629 aaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgcac 36621728  T
Q  166 ggtggataa 174  Q
    |||| ||||    
T  36621729 ggtgcataa 36621737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 50563679 - 50563752
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttat 50563752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 18923435 - 18923351
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagc 111  Q
    ||||||||||||||||| || ||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||    
T  18923435 aattgtagagagagggatagttttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagc 18923351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 6386516 - 6386564
Alignment:
Q  113 taggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6386516 taggattattacacgtgtccactaaatctgatggttgtgaagtgtttat 6386564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 48077817 - 48077861
Alignment:
Q  91 atttggtgtagtttgagaagcctaggattattacacgtgtacact 135  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  48077817 atttggtgtagtttgagaagcctaggattattacacatgtacact 48077861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 1729604 - 1729654
Alignment:
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataaaga 177  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaaga 1729654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 50754200 - 50754035
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 108  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||    
T  50754200 gagattaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgaga 50754101  T
Q  109 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  50754100 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 50754035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 52987519 - 52987686
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  52987519 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttga 52987618  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  52987619 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 52987686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 7045170 - 7045336
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||| |||    
T  7045170 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctga 7045268  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7045269 gaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataa 7045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 51362308 - 51362474
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||||||  ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  51362308 gagatgaagactcatctgaattgtagagagagagggaaag-tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 51362406  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||    
T  51362407 gaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 51362474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 19385188 - 19385351
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 108  Q
    ||||||||||||||| ||||||||||||  |||||||| ||||||||||||||||  ||||| |||||||||||||| ||||||||| ||||||||||||    
T  19385188 gagatgaagactcatctgaattgtagag--agggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgaga 19385285  T
Q  109 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||    
T  19385286 agcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 19385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 8718271 - 8718130
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  8718271 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 8718172  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||    
T  8718171 actagatctgatggttgtgaagtatttatgtacggtgcataa 8718130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 9070158 - 9070017
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  9070158 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 9070059  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||    
T  9070058 actagatctgatggttgtgaagtatttatgtacggtgcataa 9070017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 39099365 - 39099226
Alignment:
Q  35 agagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacac 134  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  39099365 agagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacac 39099266  T
Q  135 tagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||| | |||||  |||||| ||||    
T  39099265 tagatctgatggttgtgaaatatttatgcacggtgcataa 39099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 16277340 - 16277454
Alignment:
Q  64 ataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatat 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||      
T  16277340 ataaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgc 16277439  T
Q  164 acggtggataaagat 178  Q
    |||||| ||||||||    
T  16277440 acggtgcataaagat 16277454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 23699443 - 23699370
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttat 23699370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 23717898 - 23717825
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttat 23717825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 23736354 - 23736281
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttat 23736281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 17627197 - 17627254
Alignment:
Q  104 tgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttat 17627254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 23755394 - 23755349
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtaca 133  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  23755394 ttgatttgatgtaatttgagaagcctaggattattacacgtgtaca 23755349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 31852302 - 31852245
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgaga 64  Q
    ||||||||||||||| |||| |||||||||||  ||||| ||||||||||||||||||    
T  31852302 gagatgaagactcatctgaactgtagagagagagggagaactttatgttttagtgaga 31852245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 4836570 - 4836737
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4836570 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4836669  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  4836670 aaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4836737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 4842015 - 4842182
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4842015 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4842114  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  4842115 aaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4842182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 32987334 - 32987481
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32987334 aattgtagagagagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 32987433  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  32987434 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 32987481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 7058310 - 7058143
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  7058310 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttga 7058211  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||    
T  7058210 gaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataa 7058143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 39022145 - 39022004
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  39022145 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtac 39022046  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||| |||||||||||||||  |||||| ||||    
T  39022045 actagatctgatgattgtgaagtgtttatgcacggtgcataa 39022004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 8550700 - 8550533
Alignment:
Q  9 gagatgaagactcatttgaattgtagaga--gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  8550700 gagatgaagactcatctgaattgtagagaaagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttga 8550601  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  8550600 gaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 8550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 15260746 - 15260887
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  15260746 agagagagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtac 15260845  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||| |||||||||||||||||||||  |||||| ||||    
T  15260846 actagatttgatggttgtgaagtgtttatgcacggtgcataa 15260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 7614205 - 7614110
Alignment:
Q  66 aaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  7614205 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttat 7614110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 2750223 - 2750101
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag----ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagttt 104  Q
    ||||||||||||||| ||||||||||||||||    ||||||| |||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||    
T  2750223 gagatgaagactcatctgaattgtagagagagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagttt 2750124  T
Q  105 gagaagcctaggattattacacg 127  Q
    |||||| ||| ||||||||||||    
T  2750123 gagaagtctatgattattacacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 15181906 - 15181833
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttat 15181833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 1208895 - 1208829
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1208895 gagatgaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaaatgtttga 1208829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 39658412 - 39658463
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39658412 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagt 39658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 1208805 - 1208738
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||||| ||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataa 1208738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 1671891 - 1671850
Alignment:
Q  115 ggattattacacgtgtacactagatctgatggttgtgaagtg 156  Q
    |||||||||||||| ||||||| |||||||| ||||||||||    
T  1671891 ggattattacacgtatacactaaatctgatgattgtgaagtg 1671850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 22348235 - 22348081
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  22348235 gagatgaagactcatatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 22348136  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22348135 gaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttat 22348081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 18056960 - 18056813
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18056960 aattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 18056861  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  18056860 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 18056813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 179804 - 179650
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  179804 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttga 179705  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  179704 gaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgtttat 179650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 23319984 - 23320108
Alignment:
Q  37 agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacacta 136  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23319984 agagggatagctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacacta 23320083  T
Q  137 gatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||||||||    
T  23320084 gatctgatggttgtgaagtgtttat 23320108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 8402179 - 8402334
Alignment:
Q  10 agatgaagactcatttgaattgtagagagagggaga----gctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttg 105  Q
    |||||||||||||| |||||||||||||||| ||||    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||    
T  8402179 agatgaagactcatctgaattgtagagagagagagagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttg 8402278  T
Q  106 agaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  8402279 agaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttat 8402334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 45889766 - 45889625
Alignment:
Q  33 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtac 132  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||     
T  45889766 agagagagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacacatgtat 45889667  T
Q  133 actagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||| || |||||||  |||||||||||    
T  45889666 actagatctgatggttgtaaaatgtttatgcacggtggataa 45889625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 30802533 - 30802438
Alignment:
Q  66 aaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  30802533 aaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttat 30802438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 37639457 - 37639384
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttat 37639384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 35198131 - 35198204
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttat 35198204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 16115966 - 16115880
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||  |||||| ||||    
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataa 16115880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 13789 - 13642
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  13789 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 13690  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  13689 gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataa 13642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 20709950 - 20709803
Alignment:
Q  27 aattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattacac 126  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  20709950 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 20709851  T
Q  127 gtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  20709850 gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataa 20709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 18297980 - 18298147
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||||| | ||||||||||  |||||||||| ||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||    
T  18297980 gagatgaagactcatctaaattgtagagagagagggagagatttatgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttga 18298079  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  18298080 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 18298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 25193088 - 25192921
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagag--ggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttga 106  Q
    ||||||||||||| | ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  25193088 gagatgaagactcgtatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttga 25192989  T
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||    
T  25192988 gaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcataa 25192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 4281738 - 4281812
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttata 162  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttata 4281812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 25995402 - 25995329
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttat 25995329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 14551288 - 14551342
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttat 14551342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4579695 - 4579763
Alignment:
Q  9 gagatgaagactcatttgaattgtagag--agagggagagctttatgttttagtgagataaatgtttga 75  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  4579695 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttga 4579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 4579787 - 4579841
Alignment:
Q  107 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttat 4579841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 43822469 - 43822409
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggtt 148  Q
    ||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  43822469 ttgattttgtgtaatttaagaaacctaggattatcacacgtgtacactagatctgatggtt 43822409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 5098809 - 5098759
Alignment:
Q  111 cctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||||    
T  5098809 cctaggattattacacgtgtacaataaatttgatggttgtgaagtgtttat 5098759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 36636912 - 36636960
Alignment:
Q  113 taggattattacacgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||||| |  | ||||||||||||||||||||||||    
T  36636912 taggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttat 36636960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 27785 - 27649
Alignment:
Q  27 aattgtagaga--gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaggattattac 124  Q
    |||||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27785 aattgtagagaaagagggagagatttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattac 27686  T
Q  125 acgtgtacactagatctgatggttgtgaagtgtttat 161  Q
    ||||||||||||||||| || ||||||||||||||||    
T  27685 acgtgtacactagatcttatagttgtgaagtgtttat 27649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 25094 - 25268
Alignment:
Q  9 gagatgaagactcatttgaattgtagagagagggagagctttatgt---------tttagtgagataaatgtttgaagcaaatgaaatttgatttggtgt 99  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| |||||||||||||||||||| |||||||||||||    
T  25094 gagatgaagactcatctgaattgtagagagagggaaagctttatgtctttatgtttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgt 25193  T
Q  100 agtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    |||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||  |||||| ||||    
T  25194 agtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 25268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 7116 - 7042
Alignment:
Q  104 tgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataaagat 178  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaagat 7042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 10642 - 10711
Alignment:
Q  105 gagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtggataa 174  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||||||||||||  |||||| ||||    
T  10642 gagaaacctaggattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataa 10711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University