View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_64 (Length: 246)
Name: NF21347_high_64
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_64 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: scaffold0411 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 11241 - 11022
Alignment:
| Q |
22 |
aacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttgtttttt-gtctataggcaaagtatggccttaaggagaaaagcgag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
11241 |
aacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttttttttttgtctataggcaaagtatggccataaggagaaaagcgag |
11142 |
T |
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| Q |
121 |
ct--tcttcaacttatacgtaggtatccagagggccttgctgtttttgacctaaaggatgcttaccccaatgtgatggaagacttgcaggtagaatgact |
218 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11141 |
ctcttcttcaacttatacgtaggtatccagagggccttgctgtttttgacctaaaggatgcttaccccaatgtgatggaagacttgcaggtagaatgact |
11042 |
T |
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| Q |
219 |
tctgttagggttgttttctt |
238 |
Q |
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|||||||||||||||||||| |
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| T |
11041 |
tctgttagggttgttttctt |
11022 |
T |
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Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 40705718 - 40705931
Alignment:
| Q |
22 |
aacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctataggcaaagtatggccttaaggagaaaagcgagc |
121 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40705718 |
aacagttttatatttaaatactcctttagcaaataacttattcat---ttgtttgttttttgtctacaggcaaagtatggccttaaggagaaaagcgagc |
40705814 |
T |
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| Q |
122 |
ttcttcaacttatacgtaggtatccagagggccttgctgtttttgacctaaaggatgcttaccccaatgtgatggaagacttgcaggtagaatgacttct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40705815 |
ttcttcaacttatacgtaggtatccagagggccttgctgtttttgacctaaaggatgcctaccccaatgtgatggaagacttgcaggtagaatgacttct |
40705914 |
T |
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| Q |
222 |
gttagggttgttttctt |
238 |
Q |
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| T |
40705915 |
gttagggctgttttctt |
40705931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 19057099 - 19057165
Alignment:
| Q |
21 |
aaacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
87 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057099 |
aaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
19057165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 50805089 - 50805023
Alignment:
| Q |
21 |
aaacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
87 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805089 |
aaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
50805023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 50870788 - 50870854
Alignment:
| Q |
21 |
aaacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
87 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870788 |
aaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
50870854 |
T |
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