View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_67 (Length: 242)
Name: NF21347_high_67
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 37083547 - 37083335
Alignment:
| Q |
17 |
aaatactagtgtagttgaacttactgactctactgtgctggttgtttgatctttaacatgccactttgccgatctttctttggaatttttcactaccacg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37083547 |
aaatactagtgtagttgaacttactgactctactgtgctggttgtttgatctttaacatgccactttgccgatctttctttggaatttttcactaccacg |
37083448 |
T |
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| Q |
117 |
ttcgtacgcgattcttcaaaatcacttccacctttgaaaaatgctgcattcgctttatccttgtgtggatggttttttagccaataattaaccacgccga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37083447 |
ttcgtacgcgattcttcaaaatcacttccacctttgaaaaatgctgcattcgctttatccttgtgtggatggttttttagccaataattaaccacgccga |
37083348 |
T |
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| Q |
217 |
ttcgttcttcttc |
229 |
Q |
| |
|
||||||||||||| |
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| T |
37083347 |
ttcgttcttcttc |
37083335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 11002454 - 11002665
Alignment:
| Q |
21 |
actagtgtagttgaacttactgactctactgtgctggttgtttgatctttaacatgccactttgccgatctttctttggaatttttcactaccacgttcg |
120 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
11002454 |
actagtgcagttgaacttactgactctagtctgctggttgtttgatcgttaacaggccactttgccattctttctttgggatttttcactaccactttct |
11002553 |
T |
|
| Q |
121 |
tacgc---gattcttcaaaatcacttccacctttgaaaaatgctgcattcgctttatccttgtgtggatggttttttagccaataattaaccacgccgat |
217 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11002554 |
gacgacgtgattcttcaaaatcacttccaccgttgaaaaatgctgcattcactttatccttgtgtggatggttttttagccaataattaaccacgccaat |
11002653 |
T |
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| Q |
218 |
tcgttcttcttc |
229 |
Q |
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|||||||||||| |
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| T |
11002654 |
tcgttcttcttc |
11002665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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