View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_72 (Length: 237)
Name: NF21347_high_72
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_72 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27329449 - 27329229
Alignment:
| Q |
1 |
caaactatgaatctgaagtaaatagaatatgatataatgggtcgaattttgaaataggatgaccaattttgcaaaaagataaatacagaggacaaaaact |
100 |
Q |
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| T |
27329449 |
caaactatgaatctgaagtaaatagaatatgatataatgggtcgaattttgaaataggaagaccaattttgcaaaaagataaatacagaggacaaaaact |
27329350 |
T |
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| Q |
101 |
gcaattaagtcaaaaaacaataaatctatacaactgcagttgtgcaaactactgcactgcaattgtggctgcatttacatctctacaaatgatcatgaaa |
200 |
Q |
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| T |
27329349 |
gcaattaagtcaaaaaacaataaatctatacaactgcagttgtgcaaactactgcactgcaattgtggctgcatttacatctctacaactgatcatgaaa |
27329250 |
T |
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| Q |
201 |
acaattaatgttggcacattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27329249 |
acaattaatgttggcacattt |
27329229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 43365866 - 43365798
Alignment:
| Q |
41 |
gtcgaattttgaaataggatgaccaattttgcaaaaagataaatacaga-ggacaaaaactgcaattaa |
108 |
Q |
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|||||||||| ||||| || |||||||||||||||| | |||| | ||| ||| ||||||||||||||| |
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| T |
43365866 |
gtcgaattttaaaatatgaggaccaattttgcaaaatggtaaaaatagagggataaaaactgcaattaa |
43365798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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