View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21347_high_75 (Length: 232)
Name: NF21347_high_75
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_75 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 47396153 - 47396367
Alignment:
| Q |
1 |
atgtttattcatgaacttatacaaggaaagccaaaaccaatatgttgttgaccatgtagtaagttaattaaaacacataactatatatgacgcgagtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47396153 |
atgtttattcatgaacttatacaaggaaagccaaaaccaatatgttgttgaccatgtagtaagttaattaaaacacataactatatatgacgcgagtgtt |
47396252 |
T |
|
| Q |
101 |
acaaattcttgatattattaaactcatcattatttcaaagtacataaaagaggtttttgatccaaaagtgagttgatcaggtggattgtctggaataaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47396253 |
acaaattcttgatattattaaactcatcattatttcaaagtacataaaagaggtttttgatccaaaagtgagttgatcaggtggattgtctggaataaat |
47396352 |
T |
|
| Q |
201 |
ttatatggtctctgt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47396353 |
ttatatggtctctgt |
47396367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University