View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_82 (Length: 226)
Name: NF21347_high_82
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_82 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 35503829 - 35503626
Alignment:
| Q |
23 |
aacttcagaaagattcatctatttcatattcgatcactttcgttcgactaaccttcattcaactactatatattcgattaaagctcaattcaattgcttg |
122 |
Q |
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| T |
35503829 |
aacttcagaaagattcatctatttcatattcgatcactttagttcgactaaccttcattcaactactatatattcgattaaagctcaattcaattgcttg |
35503730 |
T |
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| Q |
123 |
tcatgtgttaagctaaaactattatttttaaagaatagaatattggttgagtttaatgagatggttaacggtccaaaacaactttgtacacacaaacaat |
222 |
Q |
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| T |
35503729 |
tcatgtgttaagctaaaactattatttttaaagaatataatattggttgagtttaatgaggtggttaacggttcaaaacaactttgtacacacaaacaat |
35503630 |
T |
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| Q |
223 |
caaa |
226 |
Q |
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|||| |
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| T |
35503629 |
caaa |
35503626 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 30508766 - 30508807
Alignment:
| Q |
185 |
ggttaacggtccaaaacaactttgtacacacaaacaatcaaa |
226 |
Q |
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| T |
30508766 |
ggttaacggtccaaaacaactttgcacacacaatcaatcaaa |
30508807 |
T |
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