View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_high_9 (Length: 537)
Name: NF21347_high_9
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 9834214 - 9834742
Alignment:
| Q |
1 |
gtcttctctaatgttttattttatcagtggaaatggaaacatgaaacacaagaagtaaac-----------ttgaccattagatgaaggttccaataata |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9834214 |
gtcttctctaatgttttattttatcagtggaaatggaaacatgaaacacaagaagtaaacgggcacttaacttgaccattagatgaaggttccaataata |
9834313 |
T |
|
| Q |
90 |
ggttcaatatgtacttttctgtggaatgtggaatgtatgtatgccctcaaattaacttatgaaagggaaggagttgataaatattgaacgagattaatgg |
189 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834314 |
ggttccatatgtacttttctgtggaatgtggaatgtatgtatgccctcaaattaacttatgaaagggaaggagttgataaatattgaacgagattaatgg |
9834413 |
T |
|
| Q |
190 |
ccatgcattgtcagaataaatcagttctacactgacatccaatgagaagcttccatttttcatgtcataccatatactcgaaaatacagagtgatgtcac |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834414 |
ccatgcattgtcagaataaatcagttctacactgacatccaatgagaagcttccaattttcatgtcataccatatactcgaaaatacagagtgatgtcac |
9834513 |
T |
|
| Q |
290 |
taaatagttgattttgatttgatatcagtataaaacttatttacactaacaatgtatagcctgaaaatccatattcaatttaatcactttaactatttat |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834514 |
taaatagttgattttgatttgatatcagtataaaacttatttacactaacaatgtatagcctgaaaatccatattcaatttaatcactttaactatttat |
9834613 |
T |
|
| Q |
390 |
ataaaggaaaaataaggttggaggggtagatatttgattgtgatgtggcatccttgtagaaagggggaaatttgtaattgtagttgcattgcagctgttg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834614 |
ataaaggaaaaataaggttggaggggtagatatttgattgtgatgtggcatccttgtagaaagggggaaatttgtaattgtagttgcattgcagctgttg |
9834713 |
T |
|
| Q |
490 |
taggtcgatgttagtttgtttggattggc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
9834714 |
taggtcgatgttagtttgtttggattggc |
9834742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 9845095 - 9845618
Alignment:
| Q |
1 |
gtcttctctaatgttttattttatcagtggaaatggaaacatgaaacacaagaagtaaac-----------ttgaccattagatgaaggttccaataata |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9845095 |
gtcttctctaatgttttattttatcagtggaaatggaaacatgaaacacaagaagtaaacgggcacttaacttgaccattagatgaaggttccaataata |
9845194 |
T |
|
| Q |
90 |
ggttcaatatgtacttttctgtggaatgtggaatgtatgtatgccctcaaattaacttatgaaagggaaggagttgataaatattgaacgagattaatgg |
189 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9845195 |
ggttccatatgtacttttctgtggaatgtggaatgtatgtatgccctcaaattaacttatgaaagggaaggagttgataaatattgaatgagattaatgg |
9845294 |
T |
|
| Q |
190 |
ccatgcattgtcagaataaatcagttctacactgacatccaatgagaagcttccatttttcatgtcataccatatactcgaaaatacagagtgatgtcac |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9845295 |
ccatgcattgtcagaataaatcagttctacactgacatccaatgagaagcttccatttttcatgtcata-----tactcgaaaatacagagtgatgtcac |
9845389 |
T |
|
| Q |
290 |
taaatagttgattttgatttgatatcagtataaaacttatttacactaacaatgtatagcctgaaaatccatattcaatttaatcactttaactatttat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9845390 |
taaatagttgattttgatttgatatcagtataaaacttatttacactaacaatgtatagcctgaaaatccatattcaatttaatcactttaactatttat |
9845489 |
T |
|
| Q |
390 |
ataaaggaaaaataaggttggaggggtagatatttgattgtgatgtggcatccttgtagaaagggggaaatttgtaattgtagttgcattgcagctgttg |
489 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9845490 |
aaaaaggaaaaataaggttggaggggtagatatttgattgtgatgtggcatccttgtagaaaggggggaatttgtaattgtagttgcattgcagctgttg |
9845589 |
T |
|
| Q |
490 |
taggtcgatgttagtttgtttggattggc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
9845590 |
taggtcgatgttagtttgtttggattggc |
9845618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 4301104 - 4301060
Alignment:
| Q |
15 |
tttattttatcagtggaaatggaaacatgaaacacaagaagtaaa |
59 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||||| |
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|
| T |
4301104 |
tttattttatcagtagaaatggaaacaggaaacaccagaagtaaa |
4301060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5166433 - 5166386
Alignment:
| Q |
1 |
gtcttctctaatgttttattttatcagtggaaatggaaacatgaaacac |
49 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
5166433 |
gtcttctctgatgttt-attttatcggtggaaatggaaacaggaaacac |
5166386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 24094285 - 24094339
Alignment:
| Q |
4 |
ttctctaatgttttattttatcagtggaaatggaaacatgaaacacaagaagtaaa |
59 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||||||||||||| |||| |||| |
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|
| T |
24094285 |
ttctctaat-ttttattttataagtggaaatgaaaacatgaaacactagaaataaa |
24094339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 29973903 - 29973960
Alignment:
| Q |
206 |
taaatcagttctacactgacatccaatgagaagcttcca-tttttcatgtcataccat |
262 |
Q |
| |
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||||| |||| |||||||||||||||||||| | |||| |||||||||||||||||| |
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|
| T |
29973903 |
taaattagttttacactgacatccaatgagagtcctccattttttcatgtcataccat |
29973960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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