View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_1 (Length: 787)
Name: NF21347_low_1
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_1 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 769
Target Start/End: Original strand, 9197025 - 9197791
Alignment:
| Q |
1 |
aaaagtggtgacgattagagtctcgaaaggagaggagagagaagagtatcaatatatttcttgatgatatgattgtttcaagggatgattgttattatta |
100 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
9197025 |
aaaagtggtgactattagggtctcgaaaggagaggagagagaagagtatcaatatattacttgatgatatgtttgtttcaagggatgattgttattatta |
9197124 |
T |
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| Q |
101 |
gcttagaattgattttatttttgagattatttgtagaaaggtatgtgtagaaatacaagtttcannnnnnnnngttagtagtttctttttaaatagacaa |
200 |
Q |
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||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9197125 |
gctcaaaattgattttatttttgagattatttgtagaaaagtatgcgtagaaatacaagtttcatttttttt-gttagtagtttctttttaaatagacaa |
9197223 |
T |
|
| Q |
201 |
aataacaatagtcattaaaatccttttnnnnnnnncaatagttattaaagattcacatttaattacaaaaatcggagttcaaaccataatcacaacgtct |
300 |
Q |
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| T |
9197224 |
aataacaatagtcattaaagtccttttaaaaaaaa-aatagttattaaagattcacatttaagtacaaaaatcggagttcaaaccataatcacaacgtct |
9197322 |
T |
|
| Q |
301 |
aatataaactattttgacattttattaatcgagttagaacctgcatattattattctatttaatcccaccaaatgcgtaatgctatgtttagtaaaaagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9197323 |
aatataaactattttgacattttattaatcgagttagaacctgcatattattattctatttaatcccaccaaatgtgtaatgctatgtttagtaaaaagt |
9197422 |
T |
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| Q |
401 |
aatgtataatagaaaagttagttaaaacttcacctaaaaaacagctagttaaaacttgaagcaagttgtgaataagtgaaatgatactgtacttgatata |
500 |
Q |
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| T |
9197423 |
aatgtataatagaaaagttagttaaaacttcacctaaaaaacagctagttaaaacttgaagcaagttgtgaataagtgaaatgatactgtacttaatata |
9197522 |
T |
|
| Q |
501 |
tagctgacaaattagcatatnnnnnnnnnnngtaaacaaaagtttgaagagttcgataaaagttaattgttggttagtttgaaatattaacagaatcgag |
600 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
9197523 |
tagcggacaaattagcatat-aaaaaaaaaagtaaacaaaagtttgaagtgttcgataaaagttaattgttgattagtttcaaatattagcagaatcgag |
9197621 |
T |
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| Q |
601 |
aattaatttgagaatgattt-nnnnnnngggaccaacttaatggtttactccaaaaacaaaaatatgataaaactatcgattggttgttgctgcatatat |
699 |
Q |
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| T |
9197622 |
aattaatttgagaatgatttaaaaaaaagggaccaacttaatagtttactccaaaaacaaaaatatgataaaactatcgattggttgttgctgcatatat |
9197721 |
T |
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| Q |
700 |
aattggctgctgtacatgtattgtgttgtgttgtgtcttgtttcttgtgcataggaaaattggttgctgc |
769 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9197722 |
aattggctgctgtacatgtattatgttgtgttgtgtcttgtttcttgtgcataggaaaattggttgctgc |
9197791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 19920 - 19957
Alignment:
| Q |
580 |
tgaaatattaacagaatcgagaattaatttgagaatga |
617 |
Q |
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| T |
19920 |
tgaaatattaatagaatcgggaattaatttgagaatga |
19957 |
T |
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