View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21347_low_12 (Length: 488)
Name: NF21347_low_12
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 155 - 469
Target Start/End: Original strand, 9049506 - 9049820
Alignment:
| Q |
155 |
gtagaagagagaaaaaagaaggtggatttttaggaaaccagtgaatcatgaaacagtgaataatactcaacaaagtacaccaacaaaattgaagcatgat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9049506 |
gtagaagagagaaaaaagaaggtggatttttaggaaaccagtgaatcatgaaacagtgaataatactcaacaaagtacaccaacaaaattgaagcatgat |
9049605 |
T |
|
| Q |
255 |
gtggttactgctacaagtgtggcttcaaggacagatcaggatgagaaacatgctcttgctgtggctatagctacagctgaggcagcaagagctactgctc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9049606 |
gtggttactgctacaagtgtggcttcaaggacagatcaggatgagaaacatgctcttgctgtggctatggctacagctgaggcagcaagagctactgctc |
9049705 |
T |
|
| Q |
355 |
aagctgctgtggaagttgcaaggttgactaagagttcaaatcatgctagggagcattatgctgctgttgtgattcaaacttcttttagaggttatttggt |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9049706 |
aagctgctgtggaagttgcaaggttgactaagagttcaaatcatgctagggagcattatgcagctgttgtgattcaaacttcttttagaggttatttggt |
9049805 |
T |
|
| Q |
455 |
gagttcccataacag |
469 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
9049806 |
gagttcacataacag |
9049820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 9049364 - 9049480
Alignment:
| Q |
12 |
gaagcaaaggtacttcaaaaaattctgtaaatttttcatttgtctttgtagttttaatgacccttttgtttttactatctaattcatggaaatgaagtat |
111 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||||||||| | ||| |||||||| |||||||||||||| |||| | |||||||||||||||||| || |
|
|
| T |
9049364 |
gaagaaaaggtacttaaaaaaattctgttaatttttcatttttgtttatagttttagtgacccttttgtttctactttgtaattcatggaaatgaagcat |
9049463 |
T |
|
| Q |
112 |
tgaaagaatgaaaacaa |
128 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9049464 |
tgaaagaatgaaaacaa |
9049480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University