View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_13 (Length: 473)
Name: NF21347_low_13
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 42851889 - 42851439
Alignment:
| Q |
18 |
aaagtaaatgaaaatagctaaaagcataaacaattgattcctgtagggaaagccgagtaaggaaatttcctttattttcactacatgaattcaactctaa |
117 |
Q |
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| T |
42851889 |
aaagtaaatgaaaatagctaaaagcataaacaattgattcctgtagggaaagccgagtaaggaaatttcctttattttcactacatgaattcaactctaa |
42851790 |
T |
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| Q |
118 |
ataagagttacagaagaaccactaaaattttatgcttatcactattaaaatgacctcatggatcatgataatcactaaaactgtgaatgttagctcatag |
217 |
Q |
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| T |
42851789 |
ataagagttacagaagaaccgctaaaattttatgcttatcactattaaaatgacctcatggatcatgataatcactaaaactgtgaatgttagctcatag |
42851690 |
T |
|
| Q |
218 |
gaaaaacaggacgaaaatctcaggttgaataaccgactgatatcaccaacaatgattacatgaatataagcatgtgggaattacactatggatgatttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42851689 |
gaaaaacaggacgaaaatctcaggttgaataaccgactgatatcaccaacaatgattacatgaatataagcatgtgggaattacactatggatgatttta |
42851590 |
T |
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| Q |
318 |
tatgaggtgcgctagaaatcggagagcaaagaattatgtaggcaaatgaaagtgtaatgtacaagatagagaaaggcgctcccctttgaactcgccccat |
417 |
Q |
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| T |
42851589 |
tatgaggtgcgctagaaatcagagagcaaagaactatgtaggcaaatgaaagtgtaatgtacaagatagagaaaggcgttcccctttgaactcgccccat |
42851490 |
T |
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| Q |
418 |
atcagaatcagagagtaaagaactgtgtaggcaaatgaaagtataatgtac |
468 |
Q |
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| T |
42851489 |
atcagaatcagagagtaaagaactgtgtaggcaaatgaaagtgtaatgtac |
42851439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 42851484 - 42851399
Alignment:
| Q |
334 |
aatcggagagcaaagaattatgtaggcaaatgaaagtgtaatgtacaagatagagaaaggcgctcccctttgaactcgccccatat |
419 |
Q |
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|||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
42851484 |
aatcagagagtaaagaactgtgtaggcaaatgaaagtgtaatgtacaagatagagaaaggtgttcccctttgaactcaccccatat |
42851399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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