View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21347_low_14 (Length: 472)
Name: NF21347_low_14
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 160 - 463
Target Start/End: Complemental strand, 4337650 - 4337348
Alignment:
| Q |
160 |
cagaacagttcgtgcttactcaaattaaaacccccaggagttggctttgtggtctgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4337650 |
cagaacaattcgtgcttactcaaattaaaacccctaggagttggctttgtggtgtgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt |
4337551 |
T |
|
| Q |
260 |
tgaattccccaagtaccaaaaattcttgtgttgggcccaatggagatacaaagctttgttcttgtagcaattggg-gcccccgctagtggttagtgggat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4337550 |
tgaattccccaagtaccaaaaattcttgtgttgggcc---gctccatacaaagctttgttctggtagcaattgggcccccccgctagtggttagtgggat |
4337454 |
T |
|
| Q |
359 |
ttat-cccccggattagttggtccttaggccggatatggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaagtctttcacatctt |
457 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4337453 |
ttatccccccggattagttggtccttaggccggatatggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaagtctttcacatctt |
4337354 |
T |
|
| Q |
458 |
tcatct |
463 |
Q |
| |
|
|||||| |
|
|
| T |
4337353 |
tcatct |
4337348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 4132261 - 4132404
Alignment:
| Q |
16 |
tcataaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctctttgaaatgatagaatgtcagtcattttagtccagaaag |
114 |
Q |
| |
|
||||||| |||||||| ||||||| |||||| |||||||||||||||||| |||||||||| ||||| |||| |||||||||||||| |||| |
|
|
| T |
4132261 |
tcataaatccccaaaatgatctttaaaattgaagaaataaggaaaattcacagaagctctca--------atagattgtctgtcattttagtccacaaag |
4132352 |
T |
|
| Q |
115 |
ttatccttcgaatttctcttatttcaggggattaacctaacagcgcagaaca |
166 |
Q |
| |
|
||||||| |||||||||||||||| || || ||| |||||||||||||||| |
|
|
| T |
4132353 |
ctatcctttgaatttctcttatttctggagactaagctaacagcgcagaaca |
4132404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 4318970 - 4319027
Alignment:
| Q |
20 |
aaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctct |
76 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
4318970 |
aaacccccaaaatgatctttgaaattaatgaaatatggaaaattcacagaagctctct |
4319027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University