View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_15 (Length: 461)
Name: NF21347_low_15
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 16087442 - 16087011
Alignment:
| Q |
17 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087442 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
16087343 |
T |
|
| Q |
117 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatagccgagttgtatgattcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16087342 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatggccgagttgtatgattcct |
16087243 |
T |
|
| Q |
217 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087242 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
16087143 |
T |
|
| Q |
317 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttagaaaatcaatgtgaggttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087142 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttagaaaatcaatgtgaggttt |
16087043 |
T |
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| Q |
417 |
aagatttgatatgaaattcaacaattgaatct |
448 |
Q |
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| T |
16087042 |
aagatttgatatgaaattcaacaattgaatct |
16087011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 334 - 448
Target Start/End: Complemental strand, 16439818 - 16439704
Alignment:
| Q |
334 |
ttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttagaaaatcaatgtgaggtttaagatttgatatgaaat |
433 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||| ||| |||| |||| |||| |||||| ||||||||| |
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| T |
16439818 |
ttctcaacaattggtactaaagtattgatggacataagagagacctcactaattttaatagttaaaaattcaacgtgaagtttcagatttaatatgaaat |
16439719 |
T |
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| Q |
434 |
tcaacaattgaatct |
448 |
Q |
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|||||| ||||||| |
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| T |
16439718 |
ccaacaactgaatct |
16439704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 16080975 - 16080874
Alignment:
| Q |
288 |
aaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaatt |
387 |
Q |
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|||| |||| |||||||| ||||||||||||||||| ||||| || || |||||||||||| || ||| ||||| || |||||||||||||||||||||| |
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| T |
16080975 |
aaagtttatatgtacctttatgaatggtgttgctgatctttgtaatttttcaacaattgttcctgaagtattgaaggtcataagagagacctcactaatt |
16080876 |
T |
|
| Q |
388 |
tt |
389 |
Q |
| |
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|| |
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| T |
16080875 |
tt |
16080874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 16086376 - 16086269
Alignment:
| Q |
299 |
gtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttag |
398 |
Q |
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||||||| ||||||||| ||||||| ||||| || || | || |||||| ||||||| ||||||||| | | ||||||||||||| ||||| | ||||| |
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| T |
16086376 |
gtaccttcatgaatggtattgctgaactttgaaacttatgaaaaattgtgactaaagtattgatggatacacgagagacctcactgattttagaagttag |
16086277 |
T |
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| Q |
399 |
aaaatcaa |
406 |
Q |
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|||||||| |
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| T |
16086276 |
aaaatcaa |
16086269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 16438745 - 16438644
Alignment:
| Q |
285 |
attaaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcacta |
384 |
Q |
| |
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||||||| |||| |||||||| ||| ||||| ||||||||||||| || | || |||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
16438745 |
attaaagtttatatgtaccttcatgtatggttttgctgacctttgtaacctttcgccaattgttaccaaagtattgatggacataa---agacctcacta |
16438649 |
T |
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| Q |
385 |
atttt |
389 |
Q |
| |
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||||| |
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| T |
16438648 |
atttt |
16438644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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