View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_16 (Length: 455)
Name: NF21347_low_16
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 32716907 - 32717332
Alignment:
| Q |
16 |
caattacattgtaaaaagtattccaatattcacaattttattgtcaaaatattgtactctaattgagaaatgatggatgattagctaatgcctaattagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32716907 |
caattacattgtaaaaagtattccaatattcacaattttattgtcaaaatattgtactctaattgagaaatgatggatgattagctaatgcctaattagc |
32717006 |
T |
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| Q |
116 |
agagaagattgaagaataataaacgcgtaacagggtcccaatataagttggttccaacactaaaatcgtaacaaagcctaatacatgatttatgcctccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717007 |
agagaagattgaagaataataaacgcgtaacagggtcccaatataagttggttccaacactaaaatcgtaacaaagcctaatacatgatttatgcctccc |
32717106 |
T |
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| Q |
216 |
accaccctccaagaaaaattattaaaagaagaagataagtataaagaaagagagaggaacat-gagtcttataaccctttttacccatggtcttagccta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
32717107 |
accaccctccaagaaaaattattaaaagaagaagataagtataaagaaagagagaggaacatggggtcttataaccctttttacccatggtcttagccta |
32717206 |
T |
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| Q |
315 |
tatatacccaagtcttagccacaaacttttcacaacttgaaaacaacacaccaaaatgagttcttcattttggtctttatgtttgatcttagcatcacta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717207 |
tatatacccaagtcttagccacaaacttttcacaacttaaaaacaacacaccaaaatgagttcttcattttggtctttatgtttgatcttagcatcacta |
32717306 |
T |
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| Q |
415 |
gtttcttcttcactctgtgctcctcc |
440 |
Q |
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| T |
32717307 |
gtttcttcttcactctgtgctcctcc |
32717332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 147 - 440
Target Start/End: Original strand, 32713853 - 32714144
Alignment:
| Q |
147 |
agggtcccaatataagttggttccaacactaaaatcgtaacaaagcctaatacatgatttatgcctcccaccaccctccaagaaaaattattaaaagaag |
246 |
Q |
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||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||| ||||||| |||| |
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| T |
32713853 |
agggtcccaatataatctg-ttccaacactaaaatcgtaacaaaaaaccctacatgattcttgcctcccacccccc---aagaaaaaatattaaatgaag |
32713948 |
T |
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| Q |
247 |
aagataagtataaa--gaaagagagaggaacatgagtcttataaccctttttacccatggtcttagcct-atatatacccaagtcttagccacaaacttt |
343 |
Q |
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|||||||||||| | |||||||||||||||||| |||| ||||||| |||||| || ||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
32713949 |
aagataagtatatatagaaagagagaggaacatgggtct-ataaccccttttactcaaggtcttagccttatatatatccaagtctttgccacaaacttt |
32714047 |
T |
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| Q |
344 |
tcacaacttgaaaacaacacaccaaaatgagttcttcattttggtctttatgtttgatcttagcatcactagtttcttcttcactctgtgctcctcc |
440 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||| || |||| |||| | ||||||||||| |
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| T |
32714048 |
ccacagcttgaaaacaacataccaaaatgagttcttcattttggactttgtgtttgattttagcatcacttgtctctttttcattatgtgctcctcc |
32714144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 32713741 - 32713800
Alignment:
| Q |
41 |
atattcacaattttattgtcaaaatattgtactctaattgagaaatgatggatgattagc |
100 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||| |||||||| ||||||||| |
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| T |
32713741 |
atattcacatttttattgtaaaaatattgtactcaaattgggaaatgattaatgattagc |
32713800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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