View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21347_low_17 (Length: 450)
Name: NF21347_low_17
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 26633698 - 26634132
Alignment:
| Q |
1 |
tgtagaataataatttaggagggtgtaatagaaataacaagggtgcgaaaagtttcttcctttgttaaaacggaaaggcccaatatttcacagttacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26633698 |
tgtagaataataatttaggagggtgtaatagaaataacaagggtgcaaaaagtttcttcctttgttaaaacggaaaggcccaatatttcacagttacatt |
26633797 |
T |
|
| Q |
101 |
ctacaata---tttcagaagcttcactacacnnnnnnntctcagtttctctcttgtggtagtagcgaaccctagatcgaatcatgtctggagggtacggt |
197 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26633798 |
ctacaataatatttcagaagcttcactacacaaaaaaatctcagtttctctcttgtggtagtagcgaaccctagatcgaatcatgtctggagggtacggt |
26633897 |
T |
|
| Q |
198 |
cacgatgccggaggtggctctgcgccaccttcctatggtgctagtggtggttacggaggcggaggaggtggtggctatgctggtggatatgctgggaatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26633898 |
cacgatgccggaggtggctctgcgccaccttcctatggtgctagtggtggttacggaggcggaggaggtggtggctatgctggtggatatgctgggaatg |
26633997 |
T |
|
| Q |
298 |
aaagcggtggtggttacgcagcgaaaggaagcggaaatggtggtggaagaggatatggaggtaacgatggtggaggttacggtggaaggagtggatatgg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26633998 |
aaagcggtggtggttacgcagcgaaaggaagcggaaacggtggtggtagaggatatggaggtaacgatggtggaggttacggtggaaggagtggatatgg |
26634097 |
T |
|
| Q |
398 |
tggaaacgatggaggaggatatggtggaagaggtg |
432 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
26634098 |
tggaaacgatggcggaggatatggtggaagaggtg |
26634132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University