View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_19 (Length: 448)
Name: NF21347_low_19
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 45685027 - 45684610
Alignment:
| Q |
14 |
cataggtataagagaaaaagattgaaactcacccaatgcctaatgagctacaaactagttaacaatgtccataattttgttacatgcttaatatatctaa |
113 |
Q |
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| T |
45685027 |
cataggtataagagaaaaagattgaaactcacccaatgcctaatgagctacaaactagttaacaatgtccataattttgttacatgcttaatatatctaa |
45684928 |
T |
|
| Q |
114 |
taggcttacaagctatttgtttattctgccaaactccatggtccttgctgtatgcattctttcttttatttatttagaatccttgaattatcaggatgtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45684927 |
taggcttacaagctatttgtttattctgccaaactccatggtccttgctgtatgcattctttcttttatttatttagaatccttgaattatcaggacgtg |
45684828 |
T |
|
| Q |
214 |
acagtggcttatatcttggaattgtagatgactgtagttgaggcatatgctggtgggagggagaaattaaatccaccagatgactcgtcaaaattgcatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45684827 |
acagtggcttatatcttggaattgtagatgactgtagttgaggcatatgctggtgggagggagaaattaaatccaccagatgactcgtcaaaattgcatc |
45684728 |
T |
|
| Q |
314 |
cagaagttttatctctgataaatgaaggcatagcacaaaatacaacaggcaatattttcattcctaaggtatgtcttgcctttgtacttaattttaacaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45684727 |
cagaagttttatctctgataaatgaaggcatagcacaaaatacaacaggcaatattttcattcctaaggtatgtcttgcctttgtacttaattttaacaa |
45684628 |
T |
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| Q |
414 |
ctattatgttgtgatatt |
431 |
Q |
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| T |
45684627 |
ctattatgttgtgatatt |
45684610 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 1441698 - 1441773
Alignment:
| Q |
281 |
taaatccaccagatgactcgtcaaaattgcatccagaagttttatctctgataaatgaaggcatagcacaaaatac |
356 |
Q |
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||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| |||| ||||| ||||| |
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| T |
1441698 |
taaatccaccagatgactcttcaaagttccatccagaagcattatctctgataaatgaaagcattgcacagaatac |
1441773 |
T |
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