View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_20 (Length: 432)
Name: NF21347_low_20
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_20 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 142 - 432
Target Start/End: Original strand, 11974777 - 11975067
Alignment:
| Q |
142 |
atatcatctaaacaagatcagactcctcacatttctactgcgctatttaactcaaaatacacagttaaaatatgagccgtctaatatctaatatcttatc |
241 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11974777 |
atatcatctaaacaagatcagacgactcacatttctactgcgtcatttaactcaaaatacacagttaaaatatgagccgtctaatatctaatatcttatc |
11974876 |
T |
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| Q |
242 |
agatggtttatattcacaactaccgtaaatgcgagnnnnnnnntcataccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggc |
341 |
Q |
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| T |
11974877 |
agatggtttatattcacaactaccgtaaatgcgagaaaaaaaatcataccaaaatatcaagtttgccaaattgtgatttgacaaaatctgcaagagaggc |
11974976 |
T |
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| Q |
342 |
tacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11974977 |
tacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgtttgcaaagcatgaagacct |
11975067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 11974572 - 11974708
Alignment:
| Q |
6 |
cacagaattagtgcagaaaatgataaaataactatatgatagttgcaagaattagaaattattagaagattaatcaaataatgactaacaaggacaagta |
105 |
Q |
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| T |
11974572 |
cacagaattagtgcagagaatgataaaataactat--gatagttgcaagaattagaaattattaatagattaatcaaataatgactaacaaggacaagta |
11974669 |
T |
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| Q |
106 |
tgaaacatgcatgtagaacaacaaaacaaacaatgaata |
144 |
Q |
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| T |
11974670 |
tgaaacatgcatgtagaacaacaaaacaaacaatgaata |
11974708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 12004747 - 12004891
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
12004747 |
taccagaatatcaagtttgccaaattgagatttgataaaatctgcaagagaggctacacttgcagcatcagccacatctagttgatgaaatacaacaaaa |
12004846 |
T |
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| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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| T |
12004847 |
tcagataaaccagatgctttgagtgtttccaaagcatgaagacct |
12004891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 12009839 - 12009983
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| ||||||||||||||||||| | ||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
12009839 |
taccagaatatcaagtttgccaaatcgagatttaacaaaatctgcgagagaggctacacttgcggcatcagccacatctagttgatgaaatacaacaaaa |
12009938 |
T |
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| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
12009939 |
tcagataaaccagatgctttgagtgtttccaaagcatgaagacct |
12009983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 12014414 - 12014558
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| ||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
12014414 |
taccagaatatcaagtttgccaaatcgagatttgacaaattccgcaagagaagctacacttgcagcatcagcaacatctagttgatgaaatacaacaaaa |
12014513 |
T |
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| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12014514 |
tcagataaaccagaggctttgagtgtttccaaagcatgaagacct |
12014558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 11979998 - 11980142
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
11979998 |
taccagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagtagctacacttgcagcatttgccacatctagttgatgaaatacaacaaaa |
11980097 |
T |
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| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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|||||||||||| | ||||| ||||||||||| |||||||||||| |
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| T |
11980098 |
tcagataaaccagatgctttaagtgtttccaatgcatgaagacct |
11980142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 11984355 - 11984499
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| ||||||||||| ||||| |||| |||||||| |
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| T |
11984355 |
taccagaatatcaagtttgccaaattgcgatttgacaaaatctgcaagagtagctacacttgcagcattagccacatctacttgataaaagacaacaaaa |
11984454 |
T |
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| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
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|| || | |||| | |||||||||||||||||||||||||||||| |
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| T |
11984455 |
tctgaaagaccagaagctttgagtgtttccaaagcatgaagacct |
11984499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 432
Target Start/End: Original strand, 11991863 - 11992006
Alignment:
| Q |
289 |
accaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaat |
388 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||||| |
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| T |
11991863 |
accagaatatcaagttttccaaattgagatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatctagttgatgaaatacaacaaaat |
11991962 |
T |
|
| Q |
389 |
cagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
| |
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|||| | |||| | ||||| |||||||||||||||||||||||| |
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| T |
11991963 |
cagaaagaccagaagctttaagtgtttccaaagcatgaagacct |
11992006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 11999529 - 11999673
Alignment:
| Q |
288 |
taccaaaatatcaagtttgccaaattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaa |
387 |
Q |
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||||| |||||||||||||||||| || ||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||| |
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| T |
11999529 |
taccagaatatcaagtttgccaaaatgggatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatctagttgatgaaataaaacaaaa |
11999628 |
T |
|
| Q |
388 |
tcagataaaccataggctttgagtgtttccaaagcatgaagacct |
432 |
Q |
| |
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|| || | |||| | |||||||||||||||||||||||||||||| |
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| T |
11999629 |
tctgaaagaccagaagctttgagtgtttccaaagcatgaagacct |
11999673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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