View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21347_low_21 (Length: 427)
Name: NF21347_low_21
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 48964459 - 48964871
Alignment:
| Q |
1 |
tcactgctgaatttttctcttaggatccacaacttttttaggaatagttttatctgttaattattttgaaatgatatatgtatctcaaggaagaaaaaat |
100 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48964459 |
tcactgctgaacttttctgttaggattcacaaactttttaggaatagtaatatctgtcaattattttgaaatgctatatgtatctcaaggaagaaaaaat |
48964558 |
T |
|
| Q |
101 |
aaagacaagaaagatactccacttatggaacatactactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964559 |
aaagacaagaaagatactccacttatggaacatactactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatataga |
48964658 |
T |
|
| Q |
201 |
tgtgttttaccaataactaagaccaagatagatatgtcataccaatgtgaagatggctaccaagttgttggggacaaagacttgaactttgtccgcttat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964659 |
tgtgttttaccaataactaagaccaagatagatatttcataccaatgtgaagatggctaccaagttgttggggacaaagacttgaactttgtccgcttat |
48964758 |
T |
|
| Q |
301 |
cacttatcaggatgagtggtcttctctaagacttgatttttgaaattttgatgaagaataacgatttcagacttcatttgagtggaaaacttgaatgaat |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964759 |
cacttatcaggatgaatggtcttctctaagacttgatttttgaaattttgatgaagaataacgatttcagacttcatttgagtggaaaacttgaatgaat |
48964858 |
T |
|
| Q |
401 |
aaagaaagaaact |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48964859 |
aaagaaagaaact |
48964871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 48960315 - 48960380
Alignment:
| Q |
208 |
taccaataactaagaccaagatagatatgtcataccaatgtgaagatggctaccaagttgttgggg |
273 |
Q |
| |
|
|||||| |||||||||||||||||| || | ||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
48960315 |
taccaaaaactaagaccaagatagacatttgatatcaatgtggagatggctatgaagttgttgggg |
48960380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University