View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_24 (Length: 395)
Name: NF21347_low_24
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 98 - 387
Target Start/End: Original strand, 34385690 - 34385979
Alignment:
| Q |
98 |
ataggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatg |
197 |
Q |
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| T |
34385690 |
ataggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcaatatattcaattttaacattggtttataacttacaagtcctgatg |
34385789 |
T |
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| Q |
198 |
ataaaaaggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgacc |
297 |
Q |
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| T |
34385790 |
ataaaaaggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgacc |
34385889 |
T |
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| Q |
298 |
aaagttatgatgcttcgtgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgatgatgt |
387 |
Q |
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| T |
34385890 |
aaagttatgatgcttcatgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgctgatgt |
34385979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34385590 - 34385637
Alignment:
| Q |
1 |
tctggaatatagcagcaggcagcttatagtaagttgaacatcttaatc |
48 |
Q |
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| T |
34385590 |
tctggaatatagcagcaggcagcttatagtaagttgaacatcttaatc |
34385637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 342
Target Start/End: Complemental strand, 33098420 - 33098180
Alignment:
| Q |
100 |
aggctttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatgat |
199 |
Q |
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| T |
33098420 |
aggctttatgcttcagttgttaattttcatggaaaagtcatgcaacaagttcaatgtattcaattttaacattggtttataa-------gtcctgatgat |
33098328 |
T |
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| Q |
200 |
aaaaaggctcagtagtttagtgc-----gtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcg |
294 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||| |
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| T |
33098327 |
aaaaaggctcagtactttagtgctcattgtggcttggtcagacattcaaaggataagcactacaagaaaccaagaccagatgatcatcctcattgcatcg |
33098228 |
T |
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| Q |
295 |
accaaagttatgatgcttcgtgctactgatgattcacctattcagcta |
342 |
Q |
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| T |
33098227 |
accaaagttatgatgcttcatgctactgataattcacctattcagcta |
33098180 |
T |
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