View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_25 (Length: 393)
Name: NF21347_low_25
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 103 - 382
Target Start/End: Complemental strand, 42822785 - 42822506
Alignment:
| Q |
103 |
aaatttaagtgtgaagagttcgaacctcgaccttactcataatctcccaattattgttttcaatactttatagattacttgctaattttatatattttat |
202 |
Q |
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| T |
42822785 |
aaatttaatcgtgaagagttcgaacctcgaccttacacataatctcccaattattgttttcaatactttatagattacttgctaattttatatattttat |
42822686 |
T |
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| Q |
203 |
gactcaattgaagagaagaaattgactatagttcatttttatttatatctccaataaaaagaaaaggacttgtaccgnnnnnnnggacatgatgtgcatg |
302 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42822685 |
gactaaattgaagagaagaaattgactatagttcatttttatttatatctccaataaaaagaaaaggacttgtaccgaaaaaaaggacatgatgtgcatg |
42822586 |
T |
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| Q |
303 |
aaatctccataaaactgttcaaccgtagggtacaccccacatggctcatgacaaatgctttggtttatgcttcatctcat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42822585 |
aaatctccataaaactgttcaaccgtagggtacaccccacatggctcatgacaaatgctttggtttatgcttcatttcat |
42822506 |
T |
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