View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_29 (Length: 358)
Name: NF21347_low_29
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 22512066 - 22511874
Alignment:
| Q |
1 |
ttccttcactacagacttcccttagctactcccatatttcct--gagtgatgagtgagacaaacacgcttggttttctgcagcttctgtttgcatctctg |
98 |
Q |
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| T |
22512066 |
ttccttcactacagacttcccttagctactcccatatttcctctgagtgatgagtgagacaaacacgcttggttttctgcagcttctgtttgcatctctg |
22511967 |
T |
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| Q |
99 |
ccaacgtcaccttgagtgtggctacttcagtctcaagtgcagcaacttttgattccgttgccttctgagttgggatccggtaggacggaccaa |
191 |
Q |
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| T |
22511966 |
ccaacgtcaccttgagtgtggctacttcagtctcaagtgcagcaacttttgattccattgccttctgagttggcatccggtaggacggaccaa |
22511874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 189 - 351
Target Start/End: Complemental strand, 22510884 - 22510722
Alignment:
| Q |
189 |
caagggtgtgttaagcccttgtgtgagcttctcgtctgttctgatcctacgattgtgacagtttgtctggaaggccttgaaaacatcttgaaggttgcag |
288 |
Q |
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| T |
22510884 |
caagggtgtgttaagcccttgtgtgagcttctcgtctgttctgatcctacgattgtgacagtttgtctggaaggccttgaaaacatcttgaaggttgcag |
22510785 |
T |
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| Q |
289 |
taactgctaaaatgtgctgcaatagcgatgacctgaatctctatatccaaatgtttgatgatg |
351 |
Q |
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| T |
22510784 |
taactgctaaaatgtgctgcaatagcgatgacctgaatctctatatccaaatgtttgatgatg |
22510722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 37308865 - 37308769
Alignment:
| Q |
189 |
caagggtgtgttaagcccttgtgtgagcttctcgtctgttctgatcctacgattgtgacagtttgtctggaaggccttgaaaacatcttgaaggttg |
285 |
Q |
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| T |
37308865 |
caagggtgtattaagcccttgtgtgatcttcttatctgtcccgatcctaggattgtgacagtttgtctggaaggccttgaaaacatcttgaaggttg |
37308769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 46153479 - 46153385
Alignment:
| Q |
189 |
caagggtgtgttaagcccttgtgtgagcttctcgtctgttctgatcctacgattgtgacagtttgtctggaaggccttgaaaacatcttgaaggt |
283 |
Q |
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| T |
46153479 |
caagggtgcattaagcccttgtgtgatctactcacatgtcctgatcctaggattgtgacagtttgtcttgaagggcttgaaaacatcttaaaggt |
46153385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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