View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_31 (Length: 348)
Name: NF21347_low_31
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 34592262 - 34592582
Alignment:
| Q |
9 |
gaagaatatgaaaaaactgaatgattaagccaggtacagttttaaaaaccgaagggtgtttaaaatttattttatgaaatgtttcaaaagtaaataataa |
108 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34592262 |
gaagaaaatgaaaaaactgaatggttaagccaggtacagttttaaaaaccgaagggtgtttaaaatttattttatgaaatgttttgaaagtaaataataa |
34592361 |
T |
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| Q |
109 |
gcttaattggctttcaaattgcatcaagaaggaaaagtcatacatttccatgatattaagatcgtcttaatgcatcaaaattacaaacacatatagcatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34592362 |
gcttaattggctttcaaattgcatcaagaaggaaaagtcatacatttccatgatattaagatcgtcttaatgcatcaaaattacaaacacatatagcatc |
34592461 |
T |
|
| Q |
209 |
attagtccaacatatatatgaatttattctagtacatcttattgaaaattaatatgattgaacaataatttcagctcttccacttgaaactagctcgtgg |
308 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34592462 |
attaatccaacatatatatgaatttattctagcacatcttattgaaaattaatatgattgaacaataacttcagctcttccacttgaaactagctcgtgg |
34592561 |
T |
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| Q |
309 |
gtgtcaagacatacatcttac |
329 |
Q |
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||||||||||||||||||||| |
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| T |
34592562 |
gtgtcaagacatacatcttac |
34592582 |
T |
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