View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_33 (Length: 344)
Name: NF21347_low_33
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 5419797 - 5419487
Alignment:
| Q |
16 |
atgaaaattacaccgagaaacaacctagcacttcaccaccttcaattcacgcaattgaagagaacaacgaagaatctacaataactacagctacaaatga |
115 |
Q |
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| T |
5419797 |
atgaaaattacaccgagaaacaacctagcacttcaccaccttcaattcacgcaattgaagagaacaacgaagaatctacaataactacagctacaaatga |
5419698 |
T |
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| Q |
116 |
tgatttagcttccgattctgttgactcggtgtcacgagtccatgattcatcttcgagttttctcgaattgatagcaggattgataattaacgcattagag |
215 |
Q |
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| T |
5419697 |
tgatttagcttccgattctattgactcggtgtcacgactccatgattcatcttcgagttttctcgaattgatagcaggattgataattaacgcattagag |
5419598 |
T |
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| Q |
216 |
tttcaaattaagttaattttcatgtttataacctatccattgtttttcatgtttcgctgttgcttattctttatggatccttttgggataaggaaattgg |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5419597 |
tttcaaattaagttaattttcatgtttataacttatccattgtttttcatgtttcgctgttgcttattctttatggatccttttgggataaggaaattgg |
5419498 |
T |
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| Q |
316 |
ggaaagatatc |
326 |
Q |
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||||||||||| |
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| T |
5419497 |
ggaaagatatc |
5419487 |
T |
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