View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_34 (Length: 344)
Name: NF21347_low_34
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 6692342 - 6692671
Alignment:
| Q |
1 |
ccttctccgttccagcattctgcagcctgcctgaatggttgacactccaaacacagaagtttagaagaaaa-tacaactagaataaaataatatcttaaa |
99 |
Q |
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| T |
6692342 |
ccttctccgttccagcattctgcagcctgcctgaatggttgacactccaaacacagaagtttagaagaaaaatacaactagaacaaaataatatcttaaa |
6692441 |
T |
|
| Q |
100 |
caaaatcctaaatgttgtattactgcaagatttagagataaataactttgatatgagaattcaggagggtaatcaaacagaatggtaaatttgatattgt |
199 |
Q |
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| T |
6692442 |
caaaatcctaaatgttgtattactgcaagatttagagataaataactgtgatatgagaattcaggagggtaatcaaacagaatggtaaatttgatattgt |
6692541 |
T |
|
| Q |
200 |
aaaattattagttaagttaaacaatgacaacatatacacaaaaaatttcaaatcacaagatcgtgtaaaactttaagattggaggtttcattaacccata |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6692542 |
aaaattattagttaagttaaacaacgacaacatatacacaaaaaatttcaaatcacaagatcgtgtaaaactttaagattggaggtttcattaacccata |
6692641 |
T |
|
| Q |
300 |
tagataccctaaaatgaactgccaaatatt |
329 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6692642 |
tagataccctaaaatgaactgccaaatatt |
6692671 |
T |
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