View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_35 (Length: 342)
Name: NF21347_low_35
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 25961443 - 25961783
Alignment:
| Q |
1 |
ctagtgacacttactagccaaatcgtaacattaa-taatgttgaatttaatgacttttgtttatacgagtccaaaaaattttgttctttttcttaagtat |
99 |
Q |
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|||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
25961443 |
ctagtgacacttacgggccaaatcgtaacattaaataaagctgaatttaatgacttttgtttatacgagtccacaaaattttgttctttttcttgagtat |
25961542 |
T |
|
| Q |
100 |
tttgtacnnnnnnnntaaaagataggagggagtagattttatttattgagtcaaaattctctctattgttcttttcatttattttgtcaaatctctccgg |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25961543 |
tttgtacaaaaaa--taaaagataggagggagtagattttatttattgagtcaaaattctcttcattgttcttttcatttattttgtcaaatctctccgg |
25961640 |
T |
|
| Q |
200 |
tgtttatgttactaa----------------gtacaataagttgacaattagtggatccagttatgtaatatacattttaaaattcttcaaaagaataat |
283 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25961641 |
tgtttatgttactaaagttttgggagtataagtacaataagttgacaattagtggatccagttatgtaatatacattttaaaattcttcaaaagaacaat |
25961740 |
T |
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| Q |
284 |
aatagagagggggaaaaggagaaagagaattccatagtatcct |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961741 |
aatagagagggggaaaaggagaaagagaattccatagtatcct |
25961783 |
T |
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