View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_36 (Length: 336)
Name: NF21347_low_36
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25973595 - 25973366
Alignment:
| Q |
1 |
aagagaaggataaatcaattaagaggaagagcaaccttgctgctgcatttgctgtggaagaggttgcgcctttgttgttgctacgtgcaattgaggaatt |
100 |
Q |
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| T |
25973595 |
aagagaaggataaatcaattaagaggaagagcaaccttgctgctgcatttgctgtggaagaggttgcgcctttgttgttgctatgtgcaattgaggaatt |
25973496 |
T |
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| Q |
101 |
accaatgtgcttgaggtctcaaggaagttgccttgtttctgaaggcactctacaatgctgatgtgttggaggaagagcgtgtattagtggtgtcatgaag |
200 |
Q |
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| T |
25973495 |
accaatgtgcttgaggtctcaaggaagttgccttgtttctgaaggcactctacaatgctgatgtgttggaggaagagcgtgtattagtggtgtcatgaag |
25973396 |
T |
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| Q |
201 |
ttctgaaaggagtcatcaagaactctcaga |
230 |
Q |
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| T |
25973395 |
tgctgaaaggagtcatgaagaactctcaga |
25973366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 25973331 - 25973241
Alignment:
| Q |
226 |
tcagagtgcgaatcagagacggaggaagagtcgtgtgctggaattgtttacatttgttgctttatttgtgtctttacttatatcttatctg |
316 |
Q |
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| T |
25973331 |
tcagagtgcgaatcagagacggaggaagagtcgtgtgctggaattgtttaaatttgttgctttatttgtgtctttacttatatcttatctg |
25973241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 25978950 - 25978775
Alignment:
| Q |
1 |
aagagaaggataaatcaattaagaggaagagcaaccttgctgctgcatttgctgtggaagaggttgcgcctttgttgttgctacgtgcaattgaggaatt |
100 |
Q |
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| T |
25978950 |
aagaaaaggagagatcaattaagaagaaaagcaaccttgctgctgcagttgctgtggaagatgttatacctttgctgttgttgcgtgcaattgaagaatt |
25978851 |
T |
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| Q |
101 |
accaatgtgcttgaggtctcaaggaagttgccttgtttctgaaggcactctacaatgctgatgtgttggaggaagagcgtgtat |
184 |
Q |
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| T |
25978850 |
tccaat--------gcactcaaagaagttgccttggttcggaaggcactctatgatgccgatgcgttggagtaagagcatgtat |
25978775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 25978686 - 25978626
Alignment:
| Q |
226 |
tcagagtgcgaatcagagacggaggaagagtcgtgtgctggaattgtttacatttgttgct |
286 |
Q |
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| T |
25978686 |
tcagagtgcgattcagagacggaggaagagttgtgtgctggaattctttacatctgttgct |
25978626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 31829611 - 31829695
Alignment:
| Q |
16 |
caattaagaggaagagcaaccttgctgctgcatttgctgtggaagaggttgcgcctttgttgttgctacgtgcaattgaggaatt |
100 |
Q |
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| T |
31829611 |
caattaagaagaagaattaccttgctgctgcagttgctgtggaagagggtatgccgttgctgttgctgcgtgcaattgaggaatt |
31829695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 31829721 - 31829781
Alignment:
| Q |
118 |
ctcaaggaagttgccttgtttctgaaggcactctacaatgctgatgtgttggaggaagagc |
178 |
Q |
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| T |
31829721 |
ctcaaggaagttgccctggttctgaaggcactctatgatgctgatgcgctggaggaagagc |
31829781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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