View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_37 (Length: 336)

Name: NF21347_low_37
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_37
NF21347_low_37
[»] chr1 (14 HSPs)
chr1 (1-236)||(14925156-14925390)
chr1 (66-236)||(11469081-11469253)
chr1 (128-229)||(11469705-11469806)
chr1 (128-236)||(14924674-14924782)
chr1 (128-236)||(31787478-31787586)
chr1 (128-213)||(31788216-31788301)
chr1 (130-207)||(7464012-7464089)
chr1 (130-207)||(11426882-11426959)
chr1 (130-207)||(11427449-11427526)
chr1 (130-207)||(7463444-7463521)
chr1 (130-207)||(37890475-37890552)
chr1 (141-207)||(37889908-37889974)
chr1 (136-209)||(2687675-2687748)
chr1 (132-202)||(38618264-38618334)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-241)||(12673-12912)
scaffold0189 (128-236)||(12184-12292)
[»] chr4 (18 HSPs)
chr4 (1-190)||(10420963-10421151)
chr4 (66-236)||(6246784-6246956)
chr4 (128-231)||(10421521-10421624)
chr4 (128-236)||(6247410-6247519)
chr4 (130-237)||(15481034-15481141)
chr4 (128-232)||(15481510-15481614)
chr4 (133-202)||(53664246-53664315)
chr4 (130-182)||(50709713-50709765)
chr4 (130-202)||(50710359-50710431)
chr4 (130-182)||(53665028-53665080)
chr4 (130-237)||(30809447-30809554)
chr4 (140-182)||(13856645-13856687)
chr4 (130-211)||(45331395-45331476)
chr4 (190-229)||(1014008-1014047)
chr4 (133-211)||(30808646-30808724)
chr4 (167-236)||(232028-232097)
chr4 (132-201)||(6680286-6680355)
chr4 (135-184)||(52493022-52493071)
[»] chr8 (13 HSPs)
chr8 (66-237)||(12350527-12350703)
chr8 (128-236)||(12349967-12350075)
chr8 (128-236)||(43924958-43925066)
chr8 (130-236)||(43924490-43924596)
chr8 (128-213)||(43971301-43971386)
chr8 (133-213)||(39257657-39257737)
chr8 (128-213)||(43972026-43972111)
chr8 (130-206)||(38686333-38686409)
chr8 (130-187)||(39258391-39258448)
chr8 (133-202)||(33802318-33802387)
chr8 (130-182)||(33801553-33801605)
chr8 (130-187)||(15183790-15183847)
chr8 (133-182)||(38687000-38687049)
[»] chr3 (7 HSPs)
chr3 (128-237)||(38337417-38337526)
chr3 (130-236)||(38336944-38337048)
chr3 (132-211)||(44022031-44022110)
chr3 (143-205)||(15450256-15450318)
chr3 (190-236)||(40819701-40819747)
chr3 (190-236)||(40820511-40820557)
chr3 (196-236)||(42108370-42108410)
[»] chr6 (2 HSPs)
chr6 (128-242)||(27763407-27763521)
chr6 (132-236)||(3337276-3337381)
[»] chr5 (7 HSPs)
chr5 (63-241)||(4555265-4555442)
chr5 (129-209)||(4554684-4554764)
chr5 (130-207)||(6805899-6805976)
chr5 (143-210)||(17767546-17767613)
chr5 (170-216)||(6804815-6804861)
chr5 (157-222)||(26712357-26712422)
chr5 (157-222)||(26982095-26982160)
[»] chr2 (15 HSPs)
chr2 (128-236)||(4993604-4993712)
chr2 (128-236)||(4975696-4975804)
chr2 (130-222)||(4976447-4976539)
chr2 (130-222)||(4994354-4994446)
chr2 (133-206)||(8536167-8536240)
chr2 (130-182)||(8536828-8536880)
chr2 (130-222)||(41519867-41519959)
chr2 (130-178)||(42369701-42369749)
chr2 (130-213)||(37545699-37545782)
chr2 (130-212)||(42370892-42370974)
chr2 (190-236)||(41985894-41985940)
chr2 (168-212)||(1271255-1271299)
chr2 (237-281)||(10248922-10248966)
chr2 (291-335)||(10250226-10250270)
chr2 (170-216)||(41768725-41768771)
[»] chr7 (6 HSPs)
chr7 (130-211)||(46757449-46757530)
chr7 (130-236)||(27599211-27599317)
chr7 (128-236)||(46759202-46759310)
chr7 (194-236)||(46756270-46756312)
chr7 (133-207)||(12732276-12732350)
chr7 (130-236)||(27600037-27600143)
[»] scaffold0071 (1 HSPs)
scaffold0071 (143-205)||(11873-11935)
[»] scaffold0119 (2 HSPs)
scaffold0119 (168-212)||(29938-29982)
scaffold0119 (168-212)||(36620-36664)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14925156 - 14925390
Alignment:
Q  1 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagttggggcagctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14925156 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccaaattcgggaaggagagaaagaaaagagagttggggcagctgc 14925255  T
Q  101 aagtggtgggccaatatggnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggt 200  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14925256 aagtggtgggccaatatgg-aaaaaaatctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggt 14925354  T
Q  201 ggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    || |||||||||  ||||||||||||||||||||||    
T  14925355 gggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 11469253 - 11469081
Alignment:
Q  66 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggnnnnnnnn--tctggtgttgagtgtctatgataaaagtatgttctc 163  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  11469253 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgaaaaaaaaaaatctggtgttgagtgtctatgataaaagtatgttctc 11469154  T
Q  164 tagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||  ||||||||||||||||||||| ||||||||||||| |||||||||| ||| || |||||||||||||||    
T  11469153 taccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 11469705 - 11469806
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||    
T  11469705 tctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaatta 11469804  T
Q  228 aa 229  Q
    ||    
T  11469805 aa 11469806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 14924782 - 14924674
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||    
T  14924782 tctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 14924683  T
Q  228 aacgccacc 236  Q
    ||| |||||    
T  14924682 aacaccacc 14924674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 31787586 - 31787478
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||| | | |||| | ||    
T  31787586 tctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 31787487  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  31787486 aacgccacc 31787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 31788216 - 31788301
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 213  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  ||||||||||||| ||||||||||    
T  31788216 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttc 31788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 7464012 - 7464089
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||  | |||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7464012 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||| | |||||| ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 11427449 - 11427526
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||  | |||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  11427449 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtagaaaac 11427526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||| ||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 37890475 - 37890552
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||  | |||||||| ||| |||| |||||||||||||||||||||||||| ||||||    
T  37890475 tggtgttgatggtctatgataaagttgtgttctcttgttaatctgatggtcaaaattagttttcccatggtagaaaac 37890552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  141 gtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    ||||||||||||| | |||||| ||||| ||||||||||||||||| | ||||||||||||| ||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 2687675 - 2687748
Alignment:
Q  136 tgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaa 209  Q
    |||| ||||||||||||| |||||||  ||||| ||||||  ||||||| || |||||||||||||| ||||||    
T  2687675 tgagagtctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaa 2687748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 38618334 - 38618264
Alignment:
Q  132 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 202  Q
    |||||||| ||||||||||| | | ||||| ||| || |||||||||||||| |||  |||||||||||||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgg 38618264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12673 - 12912
Alignment:
Q  1 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagttggggcagctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12673 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcaccagattcgggaaggagagaaagaaaagagagttggggcagctgc 12772  T
Q  101 aagtggtgggccaatatggnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggt 200  Q
    |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  12773 aagtggtgggccaatatggaaaaaaaa-atggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggt 12871  T
Q  201 ggaaaacaacttcacttccccaaattaaacgccacctttaa 241  Q
    || ||||||||||||||||||||||||||||||||| ||||    
T  12872 gggaaacaacttcacttccccaaattaaacgccaccattaa 12912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 12292 - 12184
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||| |||||||| |||||||||| ||| |||||||||    
T  12292 tctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaatta 12193  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  12192 aacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 10421151 - 10420963
Alignment:
Q  1 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagttggggcagctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10421151 catcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcaccaaattcgggaaggagagaaagaaaagagagttggggcagctgc 10421052  T
Q  101 aagtggtgggccaatatggnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagtt 190  Q
    |||||||||| ||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10421051 aagtggtgggtcaatatgg-aaaaaaatctggtgttgagtgtctatgataaaagtatgttatctagtttatctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 6246956 - 6246784
Alignment:
Q  66 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggnnnnnnnntc--tggtgttgagtgtctatgataaaagtatgttctc 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||            || |||||||||||||||||||||||||||||||    
T  6246956 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggaaaaaaaaaaaatgatgttgagtgtctatgataaaagtatgttctc 6246857  T
Q  164 tagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||  ||||||||||||||||||||  ||||||||||||| |||||| ||| ||| ||||||||||||||||||    
T  6246856 taccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 10421521 - 10421624
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||    
T  10421521 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaatta 10421620  T
Q  228 aacg 231  Q
    ||||    
T  10421621 aacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 6247410 - 6247519
Alignment:
Q  128 tctggtgttgagtgtctatgataaaa-gtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatt 226  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||  |||||||||| ||| ||||||||    
T  6247410 tctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaatt 6247509  T
Q  227 aaacgccacc 236  Q
    ||||||||||    
T  6247510 aaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 15481141 - 15481034
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    |||||||||| ||||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||  || |||||||||| |||||||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T
Q  230 cgccacct 237  Q
    || |||||    
T  15481041 cgtcacct 15481034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 15481510 - 15481614
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    ||||||||||||| |||||||||||| ||||||||||| || |||||  ||||||||||||||||||||| |||| |||||||||| ||| | |||||||    
T  15481510 tctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaatta 15481609  T
Q  228 aacgc 232  Q
    |||||    
T  15481610 aacgc 15481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 53664315 - 53664246
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 202  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgg 53664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 50709765 - 50709713
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 50710359 - 50710431
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 202  Q
    |||||||||||||||||||||||   |||||||||| |||||||||||||||| |||   |||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgg 50710431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    ||||||||||||||||||||||||  |||||||||| ||||| ||||||||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 30809447 - 30809554
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    |||||||||| ||||||||||||| | |||||  || || ||||| |||||||| |||  |||| ||||||||||||||||| | ||| ||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  230 cgccacct 237  Q
     |||||||    
T  30809547 tgccacct 30809554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  140 tgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 45331395 - 45331476
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaact 211  Q
    |||||||||||||||||||||| | | |||||  || || |||||||||||||| |||  |||| |||||||| ||||||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaact 45331476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 1014008 - 1014047
Alignment:
Q  190 tttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  1014008 tttcccatggtgggaaacaacttcacttacccaaattaaa 1014047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 30808724 - 30808646
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaact 211  Q
    ||||||||||||||||||| | | | |||  || || |||||||||||||| |||  ||||||||||||| ||||||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaact 30808646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 232028 - 232097
Alignment:
Q  167 tttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||||||||||||| ||||||   ||||||||||||| |||||||||| ||| |||| | ||||| |||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 6680286 - 6680355
Alignment:
Q  132 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtg 201  Q
    ||||||||  |||||||||||| |||||||| || || ||||||||||||| |||   ||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtg 6680355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 52493022 - 52493071
Alignment:
Q  135 ttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaa 184  Q
    ||||||||| ||||||||| |||||||| ||||| ||| |||||||||||    
T  52493022 ttgagtgtccatgataaaattatgttctttagttgatccaatggtcaaaa 52493071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 12350527 - 12350703
Alignment:
Q  66 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggnnnnnnnn-----tctggtgttgagtgtctatgataaaagtatgtt 160  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||||    
T  12350527 gaaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatggataaaaaaaaaaatctggtgttgagtgtctatgataaaagtatgtt 12350626  T
Q  161 ctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 237  Q
    |||||  ||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  12350627 ctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 12350075 - 12349967
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |||||||||| ||| |||||||||    
T  12350075 tctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaatta 12349976  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  12349975 aacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 43924958 - 43925066
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||  |||| |||||||| |||||||||| ||| |||||||||    
T  43924958 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaatta 43925057  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  43925058 aacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 43924596 - 43924490
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    ||||||||||||| |||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  230 cgccacc 236  Q
     ||||||    
T  43924496 tgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 43971386 - 43971301
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 213  Q
    |||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 39257737 - 39257657
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 213  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 39257657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 43972026 - 43972111
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 213  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| ||||||||||    
T  43972026 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 38686409 - 38686333
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaa 206  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaa 38686333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaatta 187  Q
    |||||||||||||||| | |||||||||||||| |||||||||||||||| |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 33802318 - 33802387
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 202  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||||||| |||   |||||||||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgg 33802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 33801605 - 33801553
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    ||||||||||||||||||||||||  |||||||||| ||||| ||||||||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 33801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 15183790 - 15183847
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaatta 187  Q
    |||| |||||||||| ||||||||  ||||| |||| |||||||||||||||||||||    
T  15183790 tggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaatta 15183847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 38687000 - 38687049
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    |||||||||||||||||||||  |||||||||| ||||||||||| ||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaa 38687049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 38337417 - 38337526
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||    
T  38337417 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 38337516  T
Q  228 aacgccacct 237  Q
    ||||||||||    
T  38337517 aacgccacct 38337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 38337048 - 38336944
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    |||||||||||||||  ||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T
Q  230 cgccacc 236  Q
     ||||||    
T  38336950 tgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 44022031 - 44022110
Alignment:
Q  132 gtgttgagtgtctatgataaaagtatgttctctagttta-tctaatggtcaaaattagttttcccatggtggaaaacaact 211  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  44022031 gtgttgagtgtgtatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 15450318 - 15450256
Alignment:
Q  143 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaa 205  Q
    ||||||||||| ||||||||||| || ||||||||||||| ||||  ||||||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 15450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 40819747 - 40819701
Alignment:
Q  190 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  40819747 tttcccatgatggaaaataacttcacttccccatattaaatgccacc 40819701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 40820511 - 40820557
Alignment:
Q  190 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  40820511 tttcccatggtgggaaaaaacttcactgccccatattaaacgccacc 40820557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  196 atggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 27763521 - 27763407
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    ||||||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  27763521 tctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaatta 27763422  T
Q  228 aacgccacctttaag 242  Q
    || | ||||| ||||    
T  27763421 aatgtcacctgtaag 27763407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 3337276 - 3337381
Alignment:
Q  132 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaatt-agttttcccatggtggaaaacaacttcacttccccaaattaaac 230  Q
    |||||||||| ||| ||||| |  ||||||  || || |||||||||| |||| | | |||| ||||||||||||| ||||||| ||||||| ||||||     
T  3337276 gtgttgagtgactaagataagaccatgttccttatttgatctaatggtaaaaaatcaatttttccatggtggaaaaaaacttcatttccccatattaaat 3337375  T
Q  231 gccacc 236  Q
    ||||||    
T  3337376 gccacc 3337381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 4555265 - 4555442
Alignment:
Q  63 cgggaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggnnnnnnnntctggtgttgagtgtctatgataaaagtatgttct 162  Q
    ||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||        | |||||||||||||||| ||||||||||||||||    
T  4555265 cgggaaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatggaaaaaaaat-tggtgttgagtgtctacgataaaagtatgttct 4555363  T
Q  163 ctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaa 241  Q
    | | |||||| || | |||||||||| ||||||||||| | |||||||||| ||| |||| | |||| |||||| ||||    
T  4555364 ccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaatgccacccttaa 4555442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 4554764 - 4554684
Alignment:
Q  129 ctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaa 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaa 4554684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 6805899 - 6805976
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    |||||||||  ||||||||||||| |||||||| | ||  |||| ||||| |||||||||||||||||||||| ||||    
T  6805899 tggtgttgatggtctatgataaaattatgttcttttgtaaatctgatggttaaaattagttttcccatggtgggaaac 6805976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 17767546 - 17767613
Alignment:
Q  143 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaac 210  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||    ||||||||||||| |||||||    
T  17767546 ctatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaac 17767613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 6804815 - 6804861
Alignment:
Q  170 atctaatggtcaaaattagttttcccatggtggaaaacaacttcact 216  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||    
T  6804815 atctaatggtcaaaattgactttcccatggtgggaaacaacttcact 6804861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  157 tgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 222  Q
    |||||| || || |||| ||||| |||||||| ||||||||||||| |||||||||| ||| ||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  157 tgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 222  Q
    |||||| || || |||| ||||| |||||||| ||||||||||||| |||||||||| ||| ||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 4993712 - 4993604
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||| | | |||| | ||    
T  4993712 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatacta 4993613  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  4993612 aacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 4975804 - 4975696
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    |||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||||||| | | |||| | ||    
T  4975804 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 4975705  T
Q  228 aacgccacc 236  Q
    |||||||||    
T  4975704 aacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 4976447 - 4976539
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 222  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| |||||||||| | ||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatcccca 4976539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 4994354 - 4994446
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 222  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| |||||||||| | ||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatcccca 4994446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 8536240 - 8536167
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaa 206  Q
    |||||||||||||||||||||  |||||||||| |||||||||| ||||| |||   |||||||||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaa 8536167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 182  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 222  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| ||| ||||||||  |  ||||||||||||| ||| |||||| ||| ||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 42369749 - 42369701
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatgg 178  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatgg 42369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 37545782 - 37545699
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 213  Q
    |||||||||||||||||||||| | | |||||  || || |||||||||||||| |||  ||||||||||||| ||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttc 37545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 42370892 - 42370974
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaactt 212  Q
    |||||| ||||||||||||||||| ||| ||||| | |||||||||||| ||| |||   ||||||||||||| |||||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactt 42370974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 41985894 - 41985940
Alignment:
Q  190 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1271299 - 1271255
Alignment:
Q  168 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 212  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 1271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 10248922 - 10248966
Alignment:
Q  237 tttaagcacacaaaaagaacacctttgaaaatagtcccacaccgc 281  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||    
T  10248922 tttaagcacgcaaaaagaacacctctgaaaacagtcccacaccgc 10248966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 10250270 - 10250226
Alignment:
Q  291 aaaatatgtgagataatttgttaaatgatcgtttgatcgtatata 335  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||    
T  10250270 aaaacatgtgagataatttgttaaatgattgtttgatcatatata 10250226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 41768725 - 41768771
Alignment:
Q  170 atctaatggtcaaaattagttttcccatggtggaaaacaacttcact 216  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||    
T  41768725 atctaatggtcaaaattgactttcccatggtgggaaacaacttcact 41768771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 46757530 - 46757449
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaact 211  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||   |||| |||||||||||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaact 46757449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 27599317 - 27599211
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    |||||||||||||||||||||| | | |||||  || || |||||||||||||| |||  ||||||||||||| |||||||| | ||| ||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  230 cgccacc 236  Q
     ||||||    
T  27599217 tgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 46759202 - 46759310
Alignment:
Q  128 tctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaatta 227  Q
    ||||||||| ||| | ||| ||| |||||||||||||| |||||||||||||||| ||||| ||| | ||| ||| |||||||| | ||| |||| | ||    
T  46759202 tctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatacta 46759301  T
Q  228 aacgccacc 236  Q
    || ||||||    
T  46759302 aatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 46756312 - 46756270
Alignment:
Q  194 ccatggtggaaaacaacttcacttccccaaattaaacgccacc 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 12732350 - 12732276
Alignment:
Q  133 tgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 207  Q
    ||||||| ||||||||||||| |||||||| ||  | ||||||||||||| |||   ||||||||||||| ||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaac 12732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 27600037 - 27600143
Alignment:
Q  130 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 229  Q
    |||||||||| ||||||||||| | | |||||  || || ||||| |||||||| |||  ||||||||||||| |||||||| | ||| ||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  230 cgccacc 236  Q
     ||||||    
T  27600137 tgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 11873 - 11935
Alignment:
Q  143 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaa 205  Q
    ||||||||||| ||||||||||| || ||||||||||||| ||||  ||||||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 29938 - 29982
Alignment:
Q  168 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 212  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 29982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  168 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 212  Q
    ||||||||  |||||||||||||||||||| |||| |||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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