View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_38 (Length: 335)
Name: NF21347_low_38
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 40753918 - 40754211
Alignment:
| Q |
25 |
gatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctat |
124 |
Q |
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| T |
40753918 |
gatgacttgaggattcctcatccctattgcacaaaacacacaaaatggaagcctccggtggaagaacgttccttaacacaaggttatcttttgtagctat |
40754017 |
T |
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| Q |
125 |
ccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaa |
224 |
Q |
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| T |
40754018 |
ccggttacggagtgccttccaagcaaacgccaccactttagatggtgcggggctcttccacatgtcttcaaaaactcccttttcctcttcatcccacaaa |
40754117 |
T |
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| Q |
225 |
tcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatct |
318 |
Q |
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| T |
40754118 |
tcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatct |
40754211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 315
Target Start/End: Complemental strand, 13854200 - 13853921
Alignment:
| Q |
36 |
gattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacgga |
135 |
Q |
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| T |
13854200 |
gattcttcatccctattacacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggttatcttttgttgctatccggttacgaa |
13854101 |
T |
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| Q |
136 |
gtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaa |
235 |
Q |
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| T |
13854100 |
gtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttcctcttcaccccacccatcctcccttga |
13854001 |
T |
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| Q |
236 |
caccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaa |
315 |
Q |
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| T |
13854000 |
aaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccacacatcaa |
13853921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
| Q |
148 |
caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc |
239 |
Q |
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| T |
8504763 |
caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc |
8504854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
| Q |
205 |
tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct |
304 |
Q |
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|||||||||||||||||||||| ||| |||||||| | |||||||| ||| || |||||||||||||| |||| ||| | |||||||| |||||||| |
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| T |
19471721 |
tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct |
19471622 |
T |
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| Q |
305 |
ccacacatc |
313 |
Q |
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|||| |||| |
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| T |
19471621 |
ccactcatc |
19471613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
| Q |
83 |
tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac |
160 |
Q |
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|||||| || ||||||||||||||||||| ||||| |||||||| ||| | |||||||||||| ||||||||||||| |
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| T |
46641722 |
tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac |
46641645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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