View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_4 (Length: 585)
Name: NF21347_low_4
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 115 - 578
Target Start/End: Complemental strand, 4560379 - 4559906
Alignment:
| Q |
115 |
aagtgaggtttaatgtaatagtnnnnnnn-gtgaggtttaatgtaaattttaatatatggggtcnnnnnnnncctca----tatgtgacctttttgttta |
209 |
Q |
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| T |
4560379 |
aagtgaggtttaatgtaatagtaaaaaaaagtgaggtttaatgtaaattttaatatgtggggtcttttttttcctcacatatatgtgacctttttgttta |
4560280 |
T |
|
| Q |
210 |
taatttctaatgaacaatatannnnnnnnnatatgtctaagatgaaagctttaattgctttacctttagaacgacccctactataaaacaagaacaaaaa |
309 |
Q |
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| T |
4560279 |
taatttctaatgaacaatatattttttttgatatgtctaagatgaaagctttaactgctttacctttagaccgacccctactataaaacaagaacaaaaa |
4560180 |
T |
|
| Q |
310 |
a-cgatagggtaaattgaggtggttcatatgtcataaatgaaatagattgctcgaagatgttcctgtataatagttatgaaaaatcatttcttgaaatca |
408 |
Q |
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| T |
4560179 |
aacgatagggtaaattgaggtggttcatatgtcataaatgaaatagattgatcgaagatgttcctgtataatagttatgaaaaatcatttcttgaaatca |
4560080 |
T |
|
| Q |
409 |
caatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatacaataccagttactttcatccttttgctagctact |
508 |
Q |
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| T |
4560079 |
caatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatacaatatcagttactttcatccttttgctagctact |
4559980 |
T |
|
| Q |
509 |
gtggcaaacattgtatagatactttaggagg----gagtagatcttcgcggctcttatagttaactttcatctc |
578 |
Q |
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| T |
4559979 |
gtggcaaacattgtatagatactttaggagggagtgagtagttcttcgcggctcttatagttaactttcatctc |
4559906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 4560503 - 4560386
Alignment:
| Q |
19 |
cattcctagttgtttcacaatcattattttagatccctcttaaagatccttgtctccaaaattcaagatatatcaagccagcaattgaattgtattaagt |
118 |
Q |
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| T |
4560503 |
cattcctagttgtttcacaatcattattttagatccctcttaaagatccttgtctccaagattcaagatatatcaagccagcaattgaatagtattaagt |
4560404 |
T |
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| Q |
119 |
gaggtttaatgtaatagt |
136 |
Q |
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| T |
4560403 |
gaggtttaatgtaatagt |
4560386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 577
Target Start/End: Complemental strand, 4566420 - 4566343
Alignment:
| Q |
504 |
ctactgtggcaaacattgtatagata----ctttaggagggagtagatcttcgcggctcttatagttaactttcatct |
577 |
Q |
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| T |
4566420 |
ctactctggcaaacattgtatagatagatactttaggagggaatagttctttgcggctcttatagttaactttaatct |
4566343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 375 - 577
Target Start/End: Original strand, 31904922 - 31905122
Alignment:
| Q |
375 |
tataatagttatgaaaaatcatttcttgaaatcacaatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatac |
474 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||| || |||||||| |||||| |
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| T |
31904922 |
tataatggttatgaaaaatcatttcttgaaatcacaatg-----tacaattgattact---tgctaatcatgagatcaacaacaatatcacaaacaatac |
31905013 |
T |
|
| Q |
475 |
aataccagttactttcatccttttgct----agct--actgtggcaaacattgtatagatactttaggagggagtagatcttcgcggctcttatagttaa |
568 |
Q |
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||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
31905014 |
aataccagttactttcatccttttgctcaggagtttgcttgtggcaaactttgtatagatactttaggagggagtagttctttgcggctcttatagttaa |
31905113 |
T |
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| Q |
569 |
ctttcatct |
577 |
Q |
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||||||||| |
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| T |
31905114 |
ctttcatct |
31905122 |
T |
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