View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_40 (Length: 330)
Name: NF21347_low_40
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 3209039 - 3208729
Alignment:
| Q |
14 |
ccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcatccc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209039 |
ccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcatccc |
3208940 |
T |
|
| Q |
114 |
ttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208939 |
ttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgc |
3208840 |
T |
|
| Q |
214 |
aattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208839 |
aattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagtt |
3208740 |
T |
|
| Q |
314 |
gatgatgatgt |
324 |
Q |
| |
|
||||||||||| |
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| T |
3208739 |
gatgatgatgt |
3208729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 3203065 - 3202759
Alignment:
| Q |
14 |
ccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcatccc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
3203065 |
ccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatccc |
3202966 |
T |
|
| Q |
114 |
ttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgc |
213 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
3202965 |
ttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgccaatggtactgc |
3202866 |
T |
|
| Q |
214 |
aattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagtt |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||| ||| ||| |
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| T |
3202865 |
aattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgtt |
3202766 |
T |
|
| Q |
314 |
gatgatg |
320 |
Q |
| |
|
||||||| |
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|
| T |
3202765 |
gatgatg |
3202759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 3216981 - 3216677
Alignment:
| Q |
20 |
ccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgt---------aaattcat |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| || ||||| || |
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| T |
3216981 |
ccacctgcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcattggagcaaggaacttcgtcacagacacaaatttat |
3216882 |
T |
|
| Q |
111 |
cccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtac |
210 |
Q |
| |
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| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| || || || || |||||||| || || ||||| ||||| |
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| T |
3216881 |
ctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgctaaaggtac |
3216782 |
T |
|
| Q |
211 |
tgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgca |
310 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||||||| || | |||||| |||| ||| ||| |||||| ||||||||||||||| |
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| T |
3216781 |
ggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatggatgctgca |
3216682 |
T |
|
| Q |
311 |
gttga |
315 |
Q |
| |
|
||||| |
|
|
| T |
3216681 |
gttga |
3216677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3232142 - 3232106
Alignment:
| Q |
18 |
caccacctgcaaaatggaatggccattgtgaattcac |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3232142 |
caccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
20 |
ccacctgcaaaatggaatggccattgtgaattca |
53 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
20 |
ccacctgcaaaatggaatggccattgtgaattca |
53 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3221909 - 3221873
Alignment:
| Q |
18 |
caccacctgcaaaatggaatggccattgtgaattcac |
54 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
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|
| T |
3221909 |
caccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3226891 - 3226855
Alignment:
| Q |
18 |
caccacctgcaaaatggaatggccattgtgaattcac |
54 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
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|
| T |
3226891 |
caccacctgcaaaatggaaaggtcattgtgaattcac |
3226855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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