View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_42 (Length: 323)
Name: NF21347_low_42
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 42620124 - 42619838
Alignment:
| Q |
14 |
ttctctcacctcaaatataaccttgtaaaacacgaccaatgatcaacacattttatattacaactaacttttttaatgatcgtgatttactcaaaaggat |
113 |
Q |
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| T |
42620124 |
ttctctcacctaaaatataaacttgtaaaacaagaccaatgaccaacatattttatattacaactaacttttttaatgatcgtgatttactcaaaagaat |
42620025 |
T |
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| Q |
114 |
cttatattatgagatacatatagtagattctttgtttc-nnnnnnnngggtacaaagtgtaggagtatatatattgcacggattaggtcgggtctaaagc |
212 |
Q |
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| T |
42620024 |
cttatattatgagatacatatagtagattctttgtttctttttttttgggtacaaagtgtaagagtatatatatttcacggattaggtcaggtctaaagc |
42619925 |
T |
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| Q |
213 |
atgaaatcaagctatatataannnnnnnngacaaagtgaaatcaagctatatatataattaaaactagtgtgttaacccgtgcaatgcac |
302 |
Q |
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| T |
42619924 |
atgaaatcaagctatatataa-tttttttgacaaagtgaaatcaagc--tatatataattaaaactagtgtattaacccgtgcaatgcac |
42619838 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 30739536 - 30739564
Alignment:
| Q |
274 |
aaactagtgtgttaacccgtgcaatgcac |
302 |
Q |
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| T |
30739536 |
aaactagtgtgttaacccgtgcaatgcac |
30739564 |
T |
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