View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21347_low_45 (Length: 297)
Name: NF21347_low_45
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21347_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 52872373 - 52872082
Alignment:
| Q |
1 |
ttaactttcttttcccaatcggcttgatgcatattttcgtatagcaccctcagcatgtacaacacttaattttggtgggacctgccgggtttacagaaga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52872373 |
ttaactttcttttcccaatcggcctgatgcatattttcgtatagcaccctcagcacgtacaacacttaattttggtgggacctgccgggtttacagaaga |
52872274 |
T |
|
| Q |
101 |
aacagatccaaagactgagtttgttactaagtttcgagcaacatggaagggagcagttctgaaccatctatgggaatctaattttacacctcagaaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52872273 |
aacagatccaaagactgagtttgttactaagtttcgagcaacatggaagggagcagttctgaaccatctatgggaatctaattttacacctcagaaaatt |
52872174 |
T |
|
| Q |
201 |
gtcaggtaagactattgtgtcccatttttatcatcctatgataagttagcatacattttttaatcagacagtttaagatgctctgtgctgct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52872173 |
gtcaggtaagactattgtgtcccatttttatcatcctatgataagttagcatacattttttaatcagacagtttaagatgctctgtgatgct |
52872082 |
T |
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