View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21347_low_46 (Length: 296)

Name: NF21347_low_46
Description: NF21347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21347_low_46
NF21347_low_46
[»] chr3 (13 HSPs)
chr3 (1-279)||(28006401-28006679)
chr3 (1-279)||(19482354-19482632)
chr3 (1-279)||(27380461-27380739)
chr3 (1-277)||(26632016-26632283)
chr3 (4-279)||(19477873-19478147)
chr3 (141-277)||(26631214-26631350)
chr3 (12-279)||(27387935-27388202)
chr3 (141-278)||(27980896-27981033)
chr3 (147-279)||(28085526-28085658)
chr3 (1-103)||(26631346-26631448)
chr3 (141-279)||(27350616-27350754)
chr3 (1-99)||(28085664-28085762)
chr3 (1-103)||(27350750-27350852)
[»] scaffold0043 (6 HSPs)
scaffold0043 (12-279)||(45812-46079)
scaffold0043 (42-279)||(30954-31191)
scaffold0043 (12-279)||(29120-29387)
scaffold0043 (12-279)||(43978-44245)
scaffold0043 (141-278)||(50934-51071)
scaffold0043 (1-103)||(50836-50938)
[»] scaffold1163 (1 HSPs)
scaffold1163 (12-235)||(881-1104)
[»] chr2 (1 HSPs)
chr2 (12-235)||(22395477-22395700)
[»] chr5 (1 HSPs)
chr5 (4-278)||(6164258-6164511)
[»] scaffold1142 (1 HSPs)
scaffold1142 (208-279)||(2531-2602)
[»] scaffold0842 (1 HSPs)
scaffold0842 (209-261)||(3433-3485)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 28006679 - 28006401
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28006679 gtgcagaaagtaattctttactttgttgtgcccactccgcgcattcagccttcaacttgctcttctgaacatcgcatgtgttcacttctgacttcaaatc 28006580  T
Q  101 atctcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||    
T  28006579 atctcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttggcagttgaagattcactgtca 28006480  T
Q  201 atgtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28006479 atgtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 28006401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 19482354 - 19482632
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    |||||||||| ||||| | ||||||||| ||||||| ||  |||||||||||||||||  || | |||||||| |||  ||||| | |||| ||||||||    
T  19482354 gtgcagaaagcaattcttcactttgttgggcccacttagaacattcagccttcaacttcttcatctgaacatcacattggttcaatactgaattcaaatc 19482453  T
Q  101 atctcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctca 200  Q
    ||||||| | |||||||| ||| |||||||||| ||||||||||||||||| ||||||||||| ||||| | || |||| || |||||| ||     |||    
T  19482454 atctctttgattctcaaggtctgccaactttttcctaagttcatcaatttgcaaagagagctcctgtattttagctttggcagttgaagttttgtcgtca 19482553  T
Q  201 atgtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    ||||   |||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19482554 atgtgagtttgtgaactctttgcactcaaaagtttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 19482632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27380739 - 27380461
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    |||||||||||||||| || |||||||| ||||||||||  |||||||||||||||||| |||| ||||||| |||  |||||| | |||||||||||||    
T  27380739 gtgcagaaagtaattctttgctttgttgagcccactcagtacattcagccttcaacttgatcttctgaacattgcaattgttcaatactgacttcaaatc 27380640  T
Q  101 atctcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctca 200  Q
     |||||| | ||||||| |||||||||||||||| || | ||||||||||| ||||||||||||| |||| |||  ||| || |||||  ||||   |||    
T  27380639 ttctctttgattctcaatatcttccaacttttttgtatgctcatcaatttgaaaagagagctcatctatccgagcattggcagttgaaatttcatggtca 27380540  T
Q  201 atgtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    |||  | |||||||||| | |||||||||||| |||||||  |||||  |||| |||||||||||||||||||||||||    
T  27380539 atgcgggtttgtgtactatatgcactccaaagtttgttcactagatcgctttttgaatcaagaagttggttgtgcttct 27380461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26632283 - 26632016
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    ||||||||||||||||  |||||||||||||||||| ||  ||||||||||||| |||  |||| |||||||| |||  ||||| | |||||||||||||    
T  26632283 gtgcagaaagtaattctctactttgttgtgcccacttagaacattcagccttcagctttttcttctgaacatcacattagttcaatgctgacttcaaatc 26632184  T
Q  101 atctcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctca 200  Q
     |||||| | |||||||||  | || | |         ||||||||||||||||||||||||||||||||||||  ||| ||| ||||| |||  | |||    
T  26632183 ctctctttgattctcaagacttgccgatt---------gttcatcaatttgtaaagagagctcatgtatctgagcattggcaactgaagtttctttgtca 26632093  T
Q  201 atgtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgctt 277  Q
    | || | |||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||| ||||||    
T  26632092 acgtgggtttgtgtactctttgcactccaaagcttgttcatgagattggttttcgaatcaataagttggtcgtgctt 26632016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 19478147 - 19477873
Alignment:
Q  4 cagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatc 103  Q
    |||||| |||||| |  |||||||| ||||||||||  |||||||||||||||||| |||| | ||||| |||| |||||||| || |||||||| | ||    
T  19478147 cagaaattaattcatcgctttgttgagcccactcagtacattcagccttcaacttgttcttctcaacattgcatctgttcactactcacttcaaagcttc 19478048  T
Q  104 tcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatg 203  Q
    |||| | |||| || ||||||||||| ||||||| | |||||| |||||||||||||||||| |||| |||  ||| || |||||  ||||   ||||||    
T  19478047 tctttgattcttaatatcttccaactcttttctatgctcatcagtttgtaaagagagctcatctatccgagcattggcagttgaaatttcatggtcaatg 19477948  T
Q  204 tcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
      | |||||||||| | ||||||||||||||||||||  ||||  ||||| |||||||||||||| ||| ||||||    
T  19477947 cgggtttgtgtactatatgcactccaaagcttgttcactagat-ggtttttgaatcaagaagttgattgagcttct 19477873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 277
Target Start/End: Complemental strand, 26631350 - 26631214
Alignment:
Q  141 tcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttca 240  Q
    |||||||||||||||||||  |||||||||||||  ||| || |||||||||| |  ||||||| | |||||||||||||||||||||||||||||||||    
T  26631350 tcatcaatttgtaaagagaattcatgtatctgagcattggcagttgaagattccccgtcaatgtgggtttgtgtactctttgcactccaaagcttgttca 26631251  T
Q  241 tgagatcagttttagaatcaagaagttggttgtgctt 277  Q
    |||||||||||||  || |||||||||||||||||||    
T  26631250 tgagatcagttttcaaagcaagaagttggttgtgctt 26631214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 27387935 - 27388202
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| ||||||| |||||||||||||  ||||||||| |||||||    ||| |||||||  ||| |||||||| ||||||||||||||||| || | |    
T  27387935 aattctttacttttttgtgcccactcactgcattcagcgttcaactcttccttctgaacattacatctgttcactactgacttcaaatcatctatttgat 27388034  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
    ||||||||||||| |||| |||||||||||||||| |||  |||||| | | |||||||||||  ||| || |||||| ||||||  |||||| |  |||    
T  27388035 tctcaagatcttctaactgttttctaagttcatcagtttccaaagagcgtttatgtatctgagcattggcagttgaagtttcactgacaatgtggaattg 27388134  T
Q  212 tgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
      |||||||||||||| ||||||| || |  ||| ||| |||  ||||||||||||| || |||||||    
T  27388135 cttactctttgcactcaaaagcttctttaaaagaccaggtttcaaatcaagaagttgcttatgcttct 27388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 27981033 - 27980896
Alignment:
Q  141 tcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttca 240  Q
    |||||||||||||| ||||| ||||||||| |||   || || ||||||||||||| ||||| | | |||||||||||||||||  ||||||||||||||    
T  27981033 tcatcaatttgtaatgagagttcatgtatccgagcaatggcagttgaagattcactgtcaatatgggtttgtgtactctttgcatcccaaagcttgttca 27980934  T
Q  241 tgagatcagttttagaatcaagaagttggttgtgcttc 278  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  27980933 tgagatcatttttcgaatcaagaagttggttgtgcttc 27980896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 28085658 - 28085526
Alignment:
Q  147 atttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttcatgagat 246  Q
    ||||||||||||||||||||||||||||  ||| || |||||||||||   ||||||| |  ||||||||||||||||||| ||||||| ||||||||||    
T  28085658 atttgtaaagagagctcatgtatctgagcattggcagttgaagattcatcgtcaatgtgggcttgtgtactctttgcactcaaaagctttttcatgagat 28085559  T
Q  247 cagttttagaatcaagaagttggttgtgcttct 279  Q
      |||||  ||||||||||||||||| ||||||    
T  28085558 tggttttcaaatcaagaagttggttgcgcttct 28085526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26631448 - 26631346
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    ||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||   ||| |||||||| ||| ||||||   |||||||||||||    
T  26631448 gtgcagaaagttattctttactttgttgtgcccactcagtacattcagccttcaacttatccttctgaacatcacatttgttcaggactgacttcaaatc 26631349  T
Q  101 atc 103  Q
    |||    
T  26631348 atc 26631346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 27350754 - 27350616
Alignment:
Q  141 tcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttca 240  Q
    |||||||||||||||||||| |||||||||||||  ||| || ||||||||||||| ||||||| | ||||||| ||  ||||||||  ||| ||||||     
T  27350754 tcatcaatttgtaaagagagatcatgtatctgagcattggcagttgaagattcactgtcaatgtgggtttgtgtgctagttgcactcttaagtttgttcc 27350655  T
Q  241 tgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    | || || ||||   ||||||||||||| ||||||||||    
T  27350654 tcagctcggtttccaaatcaagaagttgattgtgcttct 27350616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28085762 - 28085664
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaat 99  Q
    |||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||   ||| |||||||| ||| |||||| | ||||||||||||    
T  28085762 gtgcagaaagtaattctttactttgctgtgcccattcagtgcattcagccttcaacttttccttctgaacatcacatttgttcagtactgacttcaaat 28085664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27350852 - 27350750
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    ||||||| ||||| || || |||||  ||||||| |||| ||||||||||||||||||   ||| |||||||| ||| |||||||| |||||||||||||    
T  27350852 gtgcagagagtaactctttgctttgcagtgcccattcagtgcattcagccttcaacttctgcttctgaacatcacatttgttcactactgacttcaaatc 27350753  T
Q  101 atc 103  Q
    |||    
T  27350752 atc 27350750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 46079 - 45812
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| ||||||||||| ||||||| ||  |||||||||||||||||  |||| ||| |||| |||  ||||| | | ||  | ||||||| |||| | |    
T  46079 aattctttactttgttgggcccacttagaacattcagccttcaacttcttcttttgatcatcacattggttcattacagaaattaaatcatttctttgat 45980  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
     |||||| ||| |||||  ||||||||||||||||||||  ||||||| ||||||||||||||  || ||| |||||| |||| | ||||  | | ||||    
T  45979 gctcaaggtctgccaaccattttctaagttcatcaatttccaaagagatctcatgtatctgagcattaacagttgaagtttcattgtcaacatgggtttg 45880  T
Q  212 tgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    |||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||    
T  45879 tgtactctttgcactcaaaagtttgttcatgagatcagttttcgaattaagaagttggttgtgcttct 45812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 31191 - 30954
Alignment:
Q  42 cattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtttctcaagatcttccaacttttttctaagtt 141  Q
    |||||||||||||||||  |||| ||| |||| |||  ||||| | | ||  | ||||||| |||| | | |||||| ||| ||||||||||||||||||    
T  31191 cattcagccttcaacttcttcttctgatcatcacattggttcattacagaaattaaatcatttctttgatgctcaaggtctgccaacttttttctaagtt 31092  T
Q  142 catcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttcat 241  Q
    |||||||||  ||||||| ||||||||||||||  || ||| |||||| |||| | ||||  | | |||||||||||||||||||| |||| ||||||||    
T  31091 catcaatttccaaagagatctcatgtatctgagcattaacagttgaagtttcattgtcaacatgggtttgtgtactctttgcactcaaaagtttgttcat 30992  T
Q  242 gagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  30991 gagatcagttttcgaattaagaagttggttgtgcttct 30954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 29387 - 29120
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||    ||| || ||||| ||| |||||||| ||| ||||||||||||| || | |    
T  29387 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 29288  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
    |||||||||||||||||| |||||| |||||||||||||  |||||| | | |||||||||||  ||| ||||||||| ||||||  |||||| |  |||    
T  29287 tctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattgaagtttcactgacaatgtggaattg 29188  T
Q  212 tgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
      |||||||||||||| ||||||| |||| ||||   | |||  ||||||||||||| || |||||||    
T  29187 cctactctttgcactcaaaagcttcttcaagagactgggtttcaaatcaagaagttgcttatgcttct 29120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 44245 - 43978
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||    ||| || ||||| ||| |||||||| ||| ||||||||||||| || | |    
T  44245 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 44146  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
    |||||||||||||||||| |||||| |||||||||||||  |||||| | | |||||||||||  ||| ||||||||| ||||||  |||||| |  |||    
T  44145 tctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattgaagtttcactgacaatgtggaattg 44046  T
Q  212 tgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
      |||||||||||||| ||||||| |||| ||||   | |||  ||||||||||||| || |||||||    
T  44045 cctactctttgcactcaaaagcttcttcaagagactgggtttcaaatcaagaagttgcttatgcttct 43978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 50934 - 51071
Alignment:
Q  141 tcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttgtgtactctttgcactccaaagcttgttca 240  Q
    |||||||||||||||||||| |||||||||||||  ||| || ||||||||||| | | ||||| | | ||||| ||||||||||||  ||| |||||||    
T  50934 tcatcaatttgtaaagagagttcatgtatctgagcattggcagttgaagattcattgttaatgtgggtctgtgtgctctttgcactcttaagtttgttca 51033  T
Q  241 tgagatcagttttagaatcaagaagttggttgtgcttc 278  Q
    | || || |||||  ||||||||||||| |||||||||    
T  51034 tcagctcggttttcaaatcaagaagttgattgtgcttc 51071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50836 - 50938
Alignment:
Q  1 gtgcagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatc 100  Q
    ||||||| ||||| || || |||||||||||||| |||| ||||||||||||||||||   ||| |||||||  ||| |||||||| |||||||||||||    
T  50836 gtgcagagagtaactctttgctttgttgtgcccattcagtgcattcagccttcaacttctgcttctgaacataacatttgttcactactgacttcaaatc 50935  T
Q  101 atc 103  Q
    |||    
T  50936 atc 50938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 1104 - 881
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||    ||| |||||||| ||| |||| ||| ||||||||||||||||| || | |    
T  1104 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgaacatcacatttgtttactactgacttcaaatcatctatttgat 1005  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | | |||||||||||  ||| || |||||| ||||||  |||||| |  |||    
T  1004 tctcaagatcttccaactgttttctaagttcatcaatttccaaagagcgtttatgtatctgagcattggcagttgaagcttcactgacaatgtggaattg 905  T
Q  212 tgtactctttgcactccaaagctt 235  Q
      ||||||||||| || |||||||    
T  904 cttactctttgcaatcaaaagctt 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 22395700 - 22395477
Alignment:
Q  12 aattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 111  Q
    ||||| |||||||||||||||||||||  ||||||||  |||||||    ||| |||||||| ||| |||||||| ||||||||||||||||| || | |    
T  22395700 aattctttactttgttgtgcccactcactgcattcagtgttcaactcttccttctgaacatcacatttgttcactactgacttcaaatcatctatttgat 22395601  T
Q  112 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgagatttgacaattgaagattcactctcaatgtcgttttg 211  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | | |||||||||||  ||| || |||||| ||||||  |||||| |  |||    
T  22395600 tctcaagatcttccaactgttttctaagttcatcaatttccaaagagcgtttatgtatctgagcattggcagttgaagtttcactgacaatgtggaattg 22395501  T
Q  212 tgtactctttgcactccaaagctt 235  Q
      ||||||||||| || |||||||    
T  22395500 cttactctttgcaatcaaaagctt 22395477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 6164258 - 6164511
Alignment:
Q  4 cagaaagtaattccttactttgttgtgcccactcagcgcattcagccttcaacttgctcttatgaacatcgcatgtgttcacttctgacttcaaatcatc 103  Q
    |||||||||| || ||||||||||||||||| |||| ||||| |||| ||||| |   ||| |||||||| ||| |||||||| |||| |||||||||||    
T  6164258 cagaaagtaactctttactttgttgtgcccattcagtgcatttagccatcaacctctccttctgaacatcacatttgttcactactgatttcaaatcatc 6164357  T
Q  104 tcttcgtttctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgag-atttgacaattgaagattcactctcaat 202  Q
    |||| ||||| |||||||                     |||||||||||||||||| |  |||||||||| |||||  | ||||||||||||| |||||    
T  6164358 tctttgtttcacaagatc---------------------atcaatttgtaaagagagtttgtgtatctgagcatttgt-agttgaagattcactgtcaat 6164435  T
Q  203 gtcgttttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttc 278  Q
     | | || |||||||||||||||||| |||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  6164436 ttgggttagtgtactctttgcactcctaagcttgttcataatatcagttttcgaataaagaagttggttgtgcttc 6164511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 2602 - 2531
Alignment:
Q  208 tttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttct 279  Q
    |||||||||| | |||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||    
T  2602 tttgtgtactatatgcactccaaagtttgttcactagatcggtttttgaatcaagaagttggttgtgcttct 2531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0842 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 3433 - 3485
Alignment:
Q  209 ttgtgtactctttgcactccaaagcttgttcatgagatcagttttagaatcaa 261  Q
    ||||||||||||| ||||| |||| || ||||| ||||||||||| |||||||    
T  3433 ttgtgtactctttccactcaaaagtttattcataagatcagttttcgaatcaa 3485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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